Duganella zoogloeoides: SR858_14575
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Entry
SR858_14575 CDS
T09628
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dzo
Duganella zoogloeoides
Pathway
dzo03030
DNA replication
dzo03410
Base excision repair
dzo03420
Nucleotide excision repair
dzo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dzo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SR858_14575 (ligA)
03410 Base excision repair
SR858_14575 (ligA)
03420 Nucleotide excision repair
SR858_14575 (ligA)
03430 Mismatch repair
SR858_14575 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dzo03032
]
SR858_14575 (ligA)
03400 DNA repair and recombination proteins [BR:
dzo03400
]
SR858_14575 (ligA)
Enzymes [BR:
dzo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SR858_14575 (ligA)
DNA replication proteins [BR:
dzo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SR858_14575 (ligA)
DNA repair and recombination proteins [BR:
dzo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SR858_14575 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SR858_14575 (ligA)
MMR (mismatch excision repair)
DNA ligase
SR858_14575 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SR858_14575 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
BRCT_2
DZR_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WQH02303
LinkDB
All DBs
Position
complement(3311590..3313929)
Genome browser
AA seq
779 aa
AA seq
DB search
MTEVDYQARIAALSAELNRHLHAYHVQDAPTIPDAEYDKLFLELQQLELDHPELVQPDSP
TRRVGAAPLPQFDQVTHSVPMLSLNNGFTDDDIENFDRRVRDGLDTSAAVEYAAEVKYDG
LAINLRYVNGLLEQAATRGDGYTGEDVTANIRTISVIPLRLDTDNPPAVLDVRGEVLMFK
GDFAALNARQREAGQKEFVNPRNAAAGSLRQLDSRITRQRKLRFFAYGIGLLEGADMPAS
HSALLEWYQAMGLPVAKEAAVVRGYDGLMEYYQTIGAARPAMPYEIDGVVYKANRLEDQR
TLGFVSRAPRFALAHKFPAEEALTTVQAIEVQVGRTGAITPVARLASVFVGGVNVTNATL
HNEDEVRRKDVRVGDTVIVRRAGDVIPEVLAVVLERRPQPEPPMYVLPKTCPVCGSHVVR
EEGEAIARCSGGLTCAAQRKEAIRHFAGRRMMDIEGLGDRYIDNLVEHGKVKRVADLYAL
TLDDLLEMKRLADERDGTTPETVANGKVATKWAENLLEAIEASKNPPLERLLFALGIRHV
GESTAKTLAEWLGRFDLVRRVPAALLRVLPDIGGIVAISIAEFFAEPKNQEAIDALLKAG
VTPKGEHAPSAKLREKLDAVKLMAALAIPKLTEPRSKQLVEQEVSLDVLAHLTIYNVFGL
PATVSDALQAWMDVAANRQQVKALAALREDLLAQLPATVASEGHLTGKTFVLTGTLPTMG
RDQAAELIEAEGGKVSGSVSKKTHYLVAGADAGSKLAKAQELEVTILDEAGLLALLAAK
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagtagattaccaagcccgcatcgcagcgctgagcgcggaactgaaccgccac
ctgcacgcctaccacgtgcaggacgcgccgaccatcccggatgcggaatacgacaagctg
ttcctcgagctgcagcagctcgaactcgatcacccggaactggtgcagcccgactcgccc
acccggcgcgtgggcgcggcgccgctgccgcagttcgaccaggtgacgcactcggtgccg
atgctgtcgctcaataacggcttcaccgacgacgatatcgagaacttcgaccgccgcgtg
cgcgacggcctcgatacgtcggctgccgtcgaatacgcggccgaggtcaagtacgacggc
ctggccatcaacctgcgctacgtgaatggcctgctggagcaggcggccacgcgcggcgat
ggatacaccggtgaagacgtcaccgccaacatccgcaccatcagcgtgatcccgctgcgt
cttgatacagacaacccgccggcggtgctggatgtgcgcggggaagtgctgatgttcaag
ggcgactttgcagcattgaacgcgcgccagcgcgaagcaggccagaaggaattcgtcaac
ccgcgcaacgcggccgccggcagcctgcgccagctcgattcgcgcatcacgcgccagcgc
aagctgcgcttcttcgcctacggcatcggcctgctcgagggcgccgacatgccggcatcg
cacagcgcgctgctcgagtggtaccaggccatgggcctgccggtggcaaaagaggcggcc
gtggtgcgcggctacgacggcttgatggagtactaccagaccatcggcgccgcccgtccg
gccatgccgtacgagatcgacggcgtggtctacaaggccaaccggctggaagaccagcgc
acgctcggtttcgtttcgcgcgcgccgcgctttgcgctggcccataaattccctgccgag
gaggcgctgaccacggtgcaggccatcgaagtgcaggtgggccgcaccggcgccatcacg
ccggtcgcgcgcctggcctcggtgtttgtcggtggcgtgaatgtcaccaacgccacgctg
cacaacgaggacgaagtgcgccgcaaggacgtgcgcgtgggcgacaccgtgatcgtgcgc
cgcgccggcgacgtgataccggaggtgctggcggtggtgctggagcgccgcccgcagccg
gagccgcccatgtacgtgctgccgaaaacctgcccggtctgcggctcgcacgtggtgcgc
gaagagggcgaggcgattgcccgctgttccggcggtctcacgtgcgcggcccagcgcaag
gaagcgatccgccactttgccggccgccgcatgatggacatcgaaggcctgggcgaccgc
tacatcgacaacctggtcgaacacggcaaggtcaaacgcgtggccgacctgtacgcgctc
acgctcgacgacctgctggaaatgaagcggctggccgatgagcgcgacggtactactccc
gagacggttgccaacggcaaggtcgccaccaagtgggcggaaaacctgctggaagccatc
gaagcgagcaagaacccgccgctggaaaggctgctgttcgcgctcggcattcgccacgtg
ggcgaatcgaccgccaagacgctggccgagtggctcggccgcttcgacctggtgcgccgg
gtaccggccgcgctgctgcgcgtgctgcccgacatcggcggcatcgtcgccatctcgatc
gccgagttctttgccgagccgaagaaccaggaagcgatcgacgccttgctcaaggcaggc
gtcacgcccaaaggtgaacacgccccgagcgccaagctgcgcgaaaaactcgatgcggtc
aagctgatggccgcgctggcgattccgaaattgacggaaccgcgcagcaagcagctggtc
gaacaggaagtctcgctcgacgtgctggcgcatctcaccatctacaacgtgttcggcctg
ccggccacggtgtccgatgcgctgcaagcctggatggacgttgccgccaaccgccagcag
gtcaaagcgctggcggcgttgcgcgaagatctgctggcgcagctgcctgccacggtggcc
agcgaagggcacctgaccggcaagacgttcgtgctgaccggcaccttgcccaccatgggc
cgcgaccaggcggcggaactgatcgaggccgaaggcggcaaggtctccggttcggtctcg
aaaaaaacccactacctggtggccggtgcagacgccggcagcaagctggccaaggcccag
gaactggaagtgaccatcctcgacgaagcaggcctgctggcgctgctggcggcaaaataa
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