Peptoclostridium acidaminophilum: EAL2_c07030
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Entry
EAL2_c07030 CDS
T03061
Symbol
ligA
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eac
Peptoclostridium acidaminophilum
Pathway
eac03030
DNA replication
eac03410
Base excision repair
eac03420
Nucleotide excision repair
eac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EAL2_c07030 (ligA)
03410 Base excision repair
EAL2_c07030 (ligA)
03420 Nucleotide excision repair
EAL2_c07030 (ligA)
03430 Mismatch repair
EAL2_c07030 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eac03032
]
EAL2_c07030 (ligA)
03400 DNA repair and recombination proteins [BR:
eac03400
]
EAL2_c07030 (ligA)
Enzymes [BR:
eac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EAL2_c07030 (ligA)
DNA replication proteins [BR:
eac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EAL2_c07030 (ligA)
DNA repair and recombination proteins [BR:
eac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EAL2_c07030 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EAL2_c07030 (ligA)
MMR (mismatch excision repair)
DNA ligase
EAL2_c07030 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EAL2_c07030 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
AphA_like
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
AHM56004
UniProt:
W8T2N3
LinkDB
All DBs
Position
698557..700599
Genome browser
AA seq
680 aa
AA seq
DB search
MDIKYVKTRIDELIKQINHHNEMYYVYDKPEISDLEYDKLMKELIELENENPELRRPDSP
TQRVGGRALEKFEKVVHLNPMLSLSNAFSTEELYDFDRRVRVSAGENVEYVVEFKIDGLS
VSLTYEDGILKTGATRGDGTVGENVTENLKTIRSIPLRLKKDISVTVRGEVFIPKERFEE
LNVEQEENDLPLFANPRNAAAGSLRQLDPKVTAKRPLDIFIFNMENEVGEGIHSHSDSLE
FLSGIGCKVNPQNKVCKSIQEVAEYIEYWSEHRDELDYEIDGIVVKVNSLEQRELLGATE
KSPRWAVAYKFPAEQKKTRLVDIIVQVGRTGAITPTAVLEPVRVAGSTVSRATLHNEDFI
REKGIKIGDSVIIQKAGDVIPEVVMVLTEERTGTEREFSMPMVCPACGYRTMRLEGESAL
RCTNVSCPAQIRRGIIHFVSRDAMNIDGLGESIVTLLLNSGLISDIADLYMLGKEQLIPL
ERMGEKSAQNLISAIEKSKSNDLNRLIFGLGIKFIGAKAAKILSQNYESLDELIQAGYEE
IAQLEEFGPRTAESVVEYFQNERNLMLVEKLRAAGVNMKSQKAAKPAAGGLLEGLKIVLT
GKLPEMTREEAKEIIESQGGKAVSSVSKNTDFVLAGEDAGSKLDKAVTLGVKVLSEEAFK
ELLQLGSKEAVLERLKSIYG
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggatattaaatatgttaaaactagaatagatgagcttataaagcagattaaccaccac
aatgagatgtattatgtgtatgacaaacctgaaatatcagaccttgaatacgataagctg
atgaaggagctaatcgagcttgaaaatgagaatccagaattgaggcggccggattccccg
actcagagagtgggaggcagggctcttgaaaaatttgaaaaggtagtccacctaaatccc
atgctcagtctttcgaatgcattttcaactgaggagctttatgacttcgacaggagagta
agggtatctgccggcgagaatgtagagtacgtggtcgaattcaaaattgacggactttca
gtgagccttacatatgaagacggcattttgaaaaccggtgccacaaggggtgacggcacg
gtgggagagaacgtaacggaaaatttaaagacaatcaggagcataccgctaaggcttaaa
aaggatataagcgtcaccgtaagaggcgaggttttcatcccgaaggaaaggttcgaggag
ctcaatgtagagcaggaggaaaatgatcttccgctgtttgcaaacccaagaaacgcggcg
gccggctcgctaaggcagcttgatccaaaagttacagcaaaaaggcctctcgacattttc
attttcaatatggaaaatgaagtcggcgaaggcatacacagtcatagtgattcgctggag
tttctgtccggaataggctgcaaggtaaatcctcaaaacaaggtatgcaaaagcattcag
gaggttgcggagtacatagaatactggagtgagcatagggacgagctcgactatgaaata
gacggcatagtagtaaaggtcaacagccttgagcaaagggagctgctcggagcaacagaa
aaaagcccgaggtgggcggttgcctacaagtttccggcagagcagaaaaagacaaggctg
gtggacataatagtgcaggtgggcaggacgggagccattacgccgactgctgtgcttgaa
ccggtgagagttgcaggctcaacggtatcgagggccacgcttcacaacgaggacttcata
agggaaaagggaataaagataggcgacagcgttattatccaaaaggcaggggacgtaata
cccgaggttgtaatggtgctgacagaggagaggactggaactgagcgagagttctcaatg
ccaatggtgtgtccggcgtgcggctacaggactatgaggcttgaaggcgaatcggcgctc
aggtgcaccaacgtttcatgtccggcacagataagaaggggaataatacactttgtttca
agggacgctatgaacatagacgggctcggagaatcaatagtgacgctgcttttgaattcg
gggctcatatcggatattgcagacctttacatgctgggcaaggagcagcttattcctctc
gagaggatgggggaaaagtcagctcagaatctgataagcgcaattgaaaaatccaagtca
aacgacctcaacaggcttatattcgggctgggaataaagttcataggcgcgaaggcggcc
aagatactctcgcaaaactatgaaagcctcgatgagctcatacaggccggatatgaagaa
atagcgcagcttgaggagtttggcccaagaacggccgagagcgtagtagagtacttccag
aatgaaagaaatctcatgctggttgaaaagctaagggctgccggggtgaatatgaaaagc
caaaaggccgcaaagcctgcagctggaggcttgctcgaaggcctcaaaattgtactcaca
ggcaagcttcctgaaatgacaagggaagaggccaaggagataatagaatcgcagggcggt
aaggcggtatcgagtgtaagcaagaataccgattttgtgctggccggtgaggatgcgggc
tctaagctggacaaggcggttacactaggagtaaaggtgttatcggaagaagccttcaag
gaactgctgcaacttggctccaaggaagccgtgcttgaaaggctcaagagtatatatgga
taa
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