Candidatus Ecksteinia adelgidicola: F7X37_00210
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Entry
F7X37_00210 CDS
T08924
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eag
Candidatus Ecksteinia adelgidicola
Pathway
eag03030
DNA replication
eag03410
Base excision repair
eag03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F7X37_00210 (ligA)
03410 Base excision repair
F7X37_00210 (ligA)
03420 Nucleotide excision repair
F7X37_00210 (ligA)
03430 Mismatch repair
F7X37_00210 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eag03032
]
F7X37_00210 (ligA)
03400 DNA repair and recombination proteins [BR:
eag03400
]
F7X37_00210 (ligA)
Enzymes [BR:
eag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F7X37_00210 (ligA)
DNA replication proteins [BR:
eag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F7X37_00210 (ligA)
DNA repair and recombination proteins [BR:
eag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F7X37_00210 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F7X37_00210 (ligA)
MMR (mismatch excision repair)
DNA ligase
F7X37_00210 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F7X37_00210 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
DNA_ligase_ZBD
DUF3877
Motif
Other DBs
NCBI-ProteinID:
UDG79241
LinkDB
All DBs
Position
398671..400704
Genome browser
AA seq
677 aa
AA seq
DB search
MKKIIKKLNKLKILLRYHEYQYHVLDTPEVPDEDYDSLMAQLYCLENKHPQLITSDSPTQ
RIGAKPLFIFNKIQHDNVMLSLDNIFNKEDFVIFYNRIQNQLKITDPLIFCCELKLDGLA
ISLLYKDRILIRAATRGNGIIGEDVTTNVRTIHDIPLRLNGINIPSRLEIRGEIFISRNN
FKKINEEARRKGEKIFSNPRNTAAGSIRQLNPRITASRKLNFFCYGLGLLDNCNVLPLSH
FKQLMTFKSWGLPINNNIQLCTGINEVLTFYQQIKQARTLLGFDIDGIVIKVDNINFQKK
LGFISRAPRWAIAFKFPAQEKMTVVRDVKFQVGRTGVITPVARLDPVSIGGVTISNATLH
NANEMKRLNICINDTVIVRRAGDVIPQIVSVLKNKRQKNIRPIIFPKFCPICGADVHYLI
NSVTVRCTGGLICSAQRKESIKHFSSRQAMNIKGMGDKIIEKLVKIGHVKNPVDLFLLSI
NDLLEVNRIGITLAKKLIHSIEQSKYTTFSRFLYSLGIREVGITIATKLEEYFFSLEQLY
NANIIDLKNIPDIGEITAHHILNFFNKTYNKNIISKLIGPDINIHWKRVNILEKEKCFSP
FYKKIIVLTGTLEQFSRNNIMKILKSLGAKISNTVSKKTDFVITGKFTGFKLVKAKNLGI
TVIDEVELIRLINIKHN
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaatcatcaaaaagttaaataaactaaaaattctattacgttatcatgaatat
caatatcatgttttagacacaccagaagttcctgacgaagattatgacagtctaatggct
caattgtattgtttagaaaataaacatccacaattaattacttctgattcaccaacccaa
cgaattggtgctaaaccattatttatctttaataaaattcaacatgataatgtaatgtta
tcgctagacaatatttttaataaagaagattttgttatattttataatcgcatacaaaat
cagttaaaaattacagatccattaattttttgttgtgagctaaaattagatggattagca
attagtttattgtataaagatcgcatactcattcgtgctgctacaagaggtaatgggatc
atcggtgaagatgttacaactaacgttcgtactatccatgatattccattacgtttaaat
ggaattaacattccatcccgattagaaatacgcggtgaaatttttatatcacggaataat
tttaaaaaaataaacgaagaagctcgtcgtaaaggagaaaaaattttttctaatcctaga
aatactgccgctggttctattcgtcagcttaatccgcgcattactgctagtcgtaagtta
aactttttttgttatggtttaggcttattagataattgtaatgttttaccattaagtcat
tttaaacaattgatgacatttaaaagttggggattaccaattaataataacatccaactt
tgtactggaattaatgaagttctaactttttatcaacagataaaacaggcgcgtacatta
ttaggttttgatattgatggaatagtaattaaagttgataatattaattttcaaaaaaaa
ttaggcttcatatctcgggcaccccgatgggctatagcgtttaaatttccagcacaagaa
aaaatgactgtagtacgagatgttaaatttcaagtaggtcgaactggtgtcattactcca
gtggcacgattagatccagtatcaataggtggtgtcactattagtaatgctacattacat
aatgctaatgaaatgaaacgtttaaatatatgtataaacgatacagttattgttcgtcga
gctggagatgtaattcctcaaattgtatctgtattgaaaaataaacgacaaaaaaatata
cgaccaattatctttccgaaattttgtccaatatgcggtgccgatgttcattatttaata
aattcagtaacagtacgttgtacaggtggtttaatttgtagcgcacaacgtaaagaatca
attaaacatttttcatcacgacaagctatgaatataaaagggatgggtgataaaattatt
gaaaaattagtaaaaataggacatgttaaaaatccagttgatttatttttattatctata
aatgatttgttagaagttaatcgtataggtattacattagctaaaaaattaattcattca
atagaacaatcgaaatatacaactttttctcgatttttatattctttaggtattcgtgaa
gttggcataacaattgctactaagttagaagagtattttttttctttagaacaattatat
aatgctaatattatagatttaaaaaatataccagatattggagaaataacagcgcatcac
atacttaatttttttaataaaacatataataaaaatattatttctaaattaattggtcct
gatataaatattcattggaaaagagtaaatattttagaaaaagaaaaatgtttcagtcca
ttttataaaaaaattattgttctaactggcacgttagagcaattttcacgtaataatatt
atgaaaattttaaaatcattaggagcaaaaattagtaatactgtatcaaaaaaaactgat
tttgttattactgggaaatttactgggtttaagttagtaaaagcaaaaaatctagggatt
actgtaatagatgaagtagaactaattcgattaataaatattaagcataattag
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