Equus asinus (ass): 106825861
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Entry
106825861 CDS
T04645
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
eai
Equus asinus (ass)
Brite
KEGG Orthology (KO) [BR:
eai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
eai03036
]
106825861 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
eai03400
]
106825861 (SMCHD1)
Chromosome and associated proteins [BR:
eai03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
106825861 (SMCHD1)
DNA repair and recombination proteins [BR:
eai03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
106825861 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
IFT20
DUF4763
Motif
Other DBs
NCBI-GeneID:
106825861
NCBI-ProteinID:
XP_014688354
UniProt:
A0A8C4L7E9
LinkDB
All DBs
Position
7:77109412..77246052
Genome browser
AA seq
1998 aa
AA seq
DB search
MAAAGGGGPSVGTGEGGGGDGYRTVYLFDRREKESELGDRVLKVGERSDYAGFRASVCQT
LGISPEEKFVITTTSRKEVTCDNFDETVKDGVTLYLLQSVNQLLQTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRRIQIKLHFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIQNRKPSDSVHITNDDE
RFLHHLISEENEKDSFTAVVITGVQPEHIQYLKNYFPLWTRQLAHIYHYYIHGPKGNEKR
TSKEVGPFNNIDIEISMFEKGKAPKIVNLREIQDDMQTLYINTAADSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDETRT
VPIAKLDRTVAEKTVKKYVEDEMARLPDRLSVTWPEGDELLPNEVRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDPPFRVGVPFNI
PLEFQDEFGHTSQLINDIQPVLEASGLSLHYEEITKGPNCVIRGVTAKGPVNSCQGKNFN
LKVILPGLKEDSQILKIRLLPGPPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNVTAQ
PKLIVHCKFLGAPNLPVYVVDCSSSGTSILSGSAIQVQNIKKDQTLKAKIEIPSCKDVAP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGEREIHI
TSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVIIVTDQYGNQIQAFSPSSLSALGIAGIGLDS
SRLKTTFQENTQSISVRGVKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWP
ELKESIPVINGRELQHPLIVQLCDQWDNPAPVPQVKISLIKANYLKLTPSNQQHKTDERG
KANLGVFSVYAPRGEHTIQIKAVYNKTTIEGPIIKLMILPDPEKPIRLNVKYDKDASFLA
GGVFTDFMITVISEDDSIIKNINPARITMKMWKLSNSGSRPPANAETFSCNKIKDNDKED
GCFYFRDKAIPNKVGTYCIQFGFMMDKANILNSEQVIVDVLPNQPVKLVPEIQPATPAVS
NVRSVASRTLVKDLHLNITDDYNNYTGIDLVGTVIATIKGSNEEDNDTPLFIGKVRTLEF
PFVKGSAEITSLVLAENSPGRDSTEYFIIFEPRLPALSRKLESYILPFMFYNDVKKQQQM
AELTKEKDQLSKSIIMYRSLFEASKQLLDEMKCQVEEAKLKEAQLRNELKAHNIDIPTTQ
QMPHIEALLKRKTSEQEELRKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVISW
HLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKP
VGDPVFARDLLTFSDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRD
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCLILGEQIDLLQQYRTAVCKLGAVN
DDLNGQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCSDSLRHPMADCPIPPK
RMRRDTTRQNRIITKTDV
NT seq
5997 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcggcgggccctcggtggggactggagagggcggcggcggcgac
ggctacaggacagtgtacttgtttgaccggcgcgagaaggagtctgagctcggggaccgg
gtgctgaaggtcggggagcgctcggactacgcggggttccgcgcctccgtgtgtcagaca
cttggcatttcacctgaagagaaatttgttattacaacaacaagtaggaaagaagttacc
tgtgataattttgatgagactgttaaagatggagtcactctatacctgctacagtcagtc
aatcagttactacaaacagctacaaaagaacgaattgacttcctacctcactatgacaca
ctggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttaccattt
gctcttgcagaattgattgacaattcattgtctgctacttctcgtaacactggtattaga
agaatacagatcaaattgcattttgatgaaacacaaggaaaacctgccgttgcagtgata
gataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtataggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgaccagtacca
gtgccacgcagtttaaacagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacagtcagccagaatgataagcaaacctgcagattcccaagatgttcat
gagcttgtgctttctaaagaagattttgagaagaaggagaaaaacaaagaggcaatatat
agtggatatattcaaaacagaaagccatctgattctgttcacattacaaatgatgatgaa
agatttctacatcatcttatctcagaggagaacgaaaaagatagctttactgctgtggtt
atcacaggagtacaaccagaacacatacaatacttgaaaaattatttccctctttggaca
agacagttagcgcatatttatcattactatattcatggtccaaaaggaaatgaaaaacgt
acatcaaaagaagttggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaaggcacctaagattgtcaacctaagggaaatacaagatgacatgcagacgttgtat
ataaacacagcagctgatagctttgagttcaaggctcatgttgaaggagacggtgtagtg
gaagggattatccgatatcaccctttcttatatgatagagaaacttaccctgatgatcca
tgctttccatcaaaattaaaagatgaagatgatgatgatgattgtttcatacttgagaaa
gcagcaagagggaaaaggcctatttttgaatgtttttggaatggacgactaataccatat
acttctgttgaagactttgactggtgtactcctcctaagaagagagggcttgcaccaatt
gagtgctacaatagaatatctggtgcattattcactaatgacaaattccaggtcagcaca
aataaattgacttttatggatcttgagctaaaactgaaagataagaacaccctttttaca
aggattttaaatggacaggagcagcgaatgaaaattgacagagaatttgctctatggctg
aaggactgtcatgaaaagtatgacaaacaaataaaatttacactttttaaaggaataatt
acacgtcctgatcttccttctaaaaagcagggcccctgggcgacatactcagcaatagaa
tgggatggaaaaatatacaaagcaggacagctggtcaagacaatcaagacactgcctctc
ttttatggaagcatagtaaaattttttctttatggtgatcatgatggagaagtatatgct
acaggaggagaggttcaaattgcaatggaacctcaggcactgtatgatgaaacaagaact
gtcccaattgcaaaactggataggacggttgctgagaaaactgtaaaaaaatacgtggaa
gatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaaggagatgaatta
ttgccaaatgaggttaggcctgctggaacacccattggtgcattaagaattgaaatactg
aataaaaaaggggaagcaatgcagaagcttccaggaacaagtcatggagggtcaaagaaa
ctcctggttgagctcaaagttatattacactcttcaagtggaaataaagaaataatttca
catattagtcagcatggaggaaaatggccttactggtttaaaaaaatggaaaatattcaa
aagttggggaattatacactgaaattacaagttgtattgaatgaaagtaatgcagacact
tatgcaggaagaccattaccatctaaagcaattaaattttctgttaaagagggtaagcca
gagaaattttcatttggtcttctggatcctccttttcgtgttggagtcccattcaatatt
cctctggagtttcaagatgaatttggtcatactagtcaactaataaatgatattcagcca
gttcttgaagcaagtggtttatctttacattatgaagaaataaccaaaggaccgaattgt
gtaatccgaggtgttacagctaagggccctgtaaactcttgtcaaggcaagaattttaat
ctgaaggttattctgccgggtttaaaagaagactcacagattttgaaaattagattacta
ccaggtccccctcgtcgattgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccgtttcaggtagaagttttggatgaatcagacaatgtaacagcacaa
ccaaaactgattgttcattgtaagtttttaggtgctccaaaccttccagtttatgttgtg
gattgcagtagttctggaaccagtattttatcaggatctgcaattcaagttcagaatatt
aaaaaagaccagacgcttaaagctaaaattgaaatacctagttgtaaagatgtagcccct
gtggagaagactattaagttgcttcccagtagccatgttgcaagattacagattttcagt
gtggaaggacaaaaggcaatccagataaaacatcaggatgaggtcaattggatagcaggc
gatattatgcacaaccttatttttcaaatgtatgatgaaggagaaagagaaatccatata
acatcagctttagcagaaaaaattaaagttaattggactcctgagattaacaaagaacac
ttgctacagggtttgcttcctgatgtacaagtaccgacatctgtaaaagatatgcgttat
tgccaggtttcattccaagatgatcatgtgtctttggaaagtgcatttacagtaagacca
cttcctgatgaacctaaacatctaaaatgtgagttgaaaggaggaaaaacagtacagatg
ggccaagagcttcaaggagaaatagttataatagttacagatcaatatggaaatcagatt
caagcattttcaccaagttctttatctgccttgggaattgctgggattggacttgatagc
tcacgtttgaaaactacttttcaggaaaatacacaaagtataagtgtaagaggcgtcaaa
tttattccaggtcctcctggaaataaggatctttgttttacttggcgtgagttttctgac
tttattcgagtgcagctaatttctggaccaccagctaaacttctcctcatagactggcca
gaattaaaggagtccattccagtgattaatggaagagaattacagcatcctctcattgtt
caactctgtgatcagtgggataatccagcacccgtaccacaagttaaaataagtctcata
aaagctaactacttaaaactcaccccttcaaaccaacagcataaaacagacgaaaggggc
aaggctaatttgggagtgttcagtgtttatgcccctagaggagagcatactattcagatt
aaagccgtctataacaagactaccatagaaggacctataattaagttaatgattcttcca
gaccctgaaaaacccattcgtctcaatgttaaatatgacaaagatgcttcctttttagca
ggaggtgttttcactgattttatgattactgttatttctgaagatgacagtatcattaaa
aatattaatccagcacgtattactatgaaaatgtggaagctgtctaacagtgggagccga
ccaccagcaaatgcagaaacattcagttgtaataaaataaaagataatgacaaggaagat
ggctgcttctacttcagggataaagcaattcctaacaaagtggggacatattgtatccag
tttggttttatgatggataaagcaaatattcttaacagtgaacaggttatagttgatgtt
ctgcctaatcaacctgtgaagttagttccggaaattcagccagctacaccagctgtttca
aatgttcgctcagttgccagtaggaccttagtcaaagatttacatcttaatatcacggat
gactacaacaattataccggaattgatttggttggcactgtaatagctaccatcaaaggt
tctaatgaggaagataatgatacacctctctttattggaaaagttagaacacttgaattt
ccctttgtgaaaggttcagctgaaatcacgagcctagtgctggcagaaaatagtcctgga
agggatagtaccgaatattttattatatttgagcctcggctaccagctttatcaagaaaa
ttagaatcatatatcctaccgtttatgttttacaatgatgttaagaagcagcaacaaatg
gcagaacttactaaagaaaaggaccaattatctaaatctattataatgtatagaagttta
tttgaagccagcaaacagcttcttgatgaaatgaagtgccaagttgaagaagcaaaatta
aaagaggcccagttgagaaatgaactaaaagcacataatattgacattcctacaacacaa
cagatgccacacattgaagcacttttgaaaagaaagacatcagaacaggaagaactaagg
aaaaaacctagaagatcatgtactcttccaaactatactaaaggcagtggagatgttttg
ggaaagattgcacacctggcacaaattgaagatgatagagctgccatggttatttcttgg
catctagcaagtgacatggactgtgtggtcaccctgaccactgatgctgcacgtcgtatc
tatgatgaaacacaaggtcgtcagcaggtgttgccccttgattctatttataagaagact
cttccagattggaaaagacctctacctcattaccgaaatggaaaattatattttaaaccc
gttggagatccagtctttgcccgagatttgttaacattttcagataacgtagaacattgt
gaaacagtatttggtatgctgttaggagacaccattattttggataatttggatgctgcc
aatcattatagaaaagaggttgttaaaattacacactgtcctacactgctgaccagagat
ggagatcgcattcgaagtaatggaaagtttggcggccttcaaaataaagctcctccaatg
gataaacttcggggaatggtatttggagctccaatcccaaaacagtgcctgatcttaggg
gaacaaatagatcttcttcagcagtatcgtactgctgtgtgcaagttgggcgctgtgaat
gatgaccttaatggtcagttagagtaccttcacacgcctgatatgaagaagaaaaaacaa
gaactcgatgaacaagagaaaaacctgaaactaatagagcaaaaactaggtatgactccc
acacgtaagtgtagtgattcattgcgtcatccaatggctgattgtccaattcctcctaaa
agaatgagaagagacactacaagacaaaataggattataaccaaaacagatgtgtga
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