Equus asinus (ass): 106836681
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Entry
106836681 CDS
T04645
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
eai
Equus asinus (ass)
Pathway
eai03015
mRNA surveillance pathway
eai05014
Amyotrophic lateral sclerosis
eai05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
eai00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106836681
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
106836681
05022 Pathways of neurodegeneration - multiple diseases
106836681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eai03019
]
106836681
Messenger RNA biogenesis [BR:
eai03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
106836681
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
RL
RRM_5
Motif
Other DBs
NCBI-GeneID:
106836681
NCBI-ProteinID:
XP_014705299
UniProt:
A0A8C4MJ10
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Position
5:9747357..9769586
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AA seq
414 aa
AA seq
DB search
MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
KEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFVTFADDQVA
QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQSQSGPSGNNQSQGNMQ
REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatatattcgggtaacggaagatgagaatgatgagcccattgaaataccgtcg
gaagacgatgggacggtgctgctgtccacggtgacagcccagtttccaggagcatgtggg
ctgcgctataggaatccagtgtctcagtgtatgagaggggtccggctggtagaaggaatt
ctgcatgctccggatgctggctgggggaacctggtgtacgttgtcaactatcccaaagat
aacaaaagaaaaatggatgagacagatgcttcatcagcagtgaaagtgaaaagagcagtc
cagaaaacatctgatttaatagtgttgggtctcccgtggaaaacaactgaacaggatcta
aaggaatattttagtacctttggagaagttcttatggttcaggtcaagaaagatattaaa
actggtcattcaaaagggtttggctttgttcgttttacggaatatgaaactcaggtgaaa
gtaatgtcacagcgacatatgatagatggacgatggtgtgactgtaaacttcctaattct
aagcaaagcccagatgagcctctgagaagccggaaggtgtttgtcgggcgttgcacggag
gacatgactgccgacgagctgcggcagttcttctgccagtatggagaagtggtagacgtc
ttcatccccaaaccattcagggcttttgcctttgttacatttgcagatgatcaggttgcc
cagtctctttgtggagaggacttgatcattaaaggaatcagcgtacatatatccaatgct
gaacctaagcacaatagcaatagacagttagaaagaagtggaagatttggtggtaatcca
ggtggttttgggaatcagggtggatttggtaacagtagagggggtggagctggtttggga
aataatcaaggtagtaatatgggtggagggatgaactttggcgcttttagcataaatcca
gccatgatggccgcagcccaggcagccctgcagagcagctggggtatgatgggcatgtta
gccagtcagcagagccagtcgggcccgtcaggtaataaccaaagccaaggcaacatgcag
agggagccaaatcaggcctttggttctggaaataactcttacagtggttctaattcaggt
gcagcaattggttggggatcagcatccaatgcggggtcaggcagtggttttaatggaggc
tttggctcaagcatggattctaaatcctctggctggggaatgtag
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