Candidatus Electrothrix aestuarii: Q3M24_07510
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Entry
Q3M24_07510 CDS
T10293
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eaj Candidatus Electrothrix aestuarii
Pathway
eaj03030
DNA replication
eaj03410
Base excision repair
eaj03420
Nucleotide excision repair
eaj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q3M24_07510 (ligA)
03410 Base excision repair
Q3M24_07510 (ligA)
03420 Nucleotide excision repair
Q3M24_07510 (ligA)
03430 Mismatch repair
Q3M24_07510 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eaj03032
]
Q3M24_07510 (ligA)
03400 DNA repair and recombination proteins [BR:
eaj03400
]
Q3M24_07510 (ligA)
Enzymes [BR:
eaj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Q3M24_07510 (ligA)
DNA replication proteins [BR:
eaj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q3M24_07510 (ligA)
DNA repair and recombination proteins [BR:
eaj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Q3M24_07510 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q3M24_07510 (ligA)
MMR (mismatch excision repair)
DNA ligase
Q3M24_07510 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q3M24_07510 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
BRCT_2
UPF0758_N
Metalloenzyme
Motif
Other DBs
NCBI-ProteinID:
XCN74582
UniProt:
A0AAU8M0K8
LinkDB
All DBs
Position
1604562..1606601
Genome browser
AA seq
679 aa
AA seq
DB search
MKAMNVQEAEKRLKDLRAQITRHAHQYYVLDDPLISDGEYDQLFRELLDLEEQFPDLVTP
DSPSLRVGGEPLAAFAEAEHAVPMLSLDNVFNAQELKDFEEKIQRYLQATTQPTYLAEPK
LDGLAVELIYENGLLVQGSTRGNGLVGENITAQLQTVQSIPLRLVAQEGQEDIAIPEKLV
VRGEVFLPRKGFLQLNEQRAKQGEALFANPRNAAAGSLRQLDPKVTASRPLRFYVYGVGD
TAPAPCADLEQLFSWLGQLGFPVNSLIKFCSTLAEVEEQYQHLQAIRHELEYEIDGMVIK
VADFALQQRLGNTTRAPRWATAWKFPATQATTVMTGVDFQVGRTGAITPVAILEPVAVEG
VIVRRATLHNQDEIERKGLKIGDTVLIQRAGDVIPEIVKPIIEQRSGAEQPIPFPSQCPV
CTSPLQRPEGEAVTRCINLHCPAQQLQRMIYFVGKAGLDIDGFGKKNVEQLLEVGLIREI
PDIFRLRKEQLAVLDGWGEKSAEKLLLAIDEAKHPTLARFIGALGIRYVGEMTSELLTRH
FSSLDALLAAEKEDLLAVEGIGEQAAMSLTEYFSNSENRKMIETLLGLGLTIETTVQGNS
ENNPLEGAIFLFTGTLSQMSRNEAKQLVKDRGGRVVSGLSKQVTHLVAGEKAGSKLKKAQ
ELGVTVVGEEEFLGIVGRG
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcaatgaatgttcaggaagcagaaaaacgcctcaaagatctgcgggcgcagatc
acccggcacgcccaccagtactacgtgctggatgacccgcttatctccgacggcgagtat
gaccagctgtttcgggagctgctggacctggaagagcagttcccggacttggttaccccg
gattccccgagcctgcgggtgggtggcgagccgcttgccgcctttgctgaggccgaacat
gctgtgcccatgctcagtctggataatgttttcaatgcgcaggaactcaaggactttgaa
gaaaaaatccagcgctatctgcaagcaacaacgcaacccacctatctggccgaacccaag
ctggacggcctggcagtggagttgatctatgaaaacggcctgttggtgcaaggttccacc
cgaggcaatggcctggtgggcgaaaacatcacagcccagctccagaccgtgcagagcatt
cccttacgcctggtcgcacaagaagggcaggaggatatcgcgatcccggaaaaactggtg
gttcggggagaggtttttctcccccgcaagggctttcttcagctcaatgaacaacgggct
aagcagggcgaggccctgtttgccaacccgcgcaatgctgctgccggttccctgcgccag
cttgatcccaaggtgaccgcctccagaccgctccgtttttatgtctacggtgtgggggat
accgcgccagctccctgcgctgacctggagcagcttttttcctggctcggccagctgggt
tttccggtcaattccctgatcaaattttgcagcaccttggcagaggtggaagagcagtat
cagcatctccaggccattcgccatgaactggagtatgagatcgacggcatggtgattaag
gtggcggattttgccctgcaacaacggctgggcaataccacccgtgccccgcgctgggcc
acagcctggaagtttcccgctacccaggctaccaccgttatgaccggggttgattttcag
gtgggaaggacaggggccatcactccggtggcgatcctggaaccggttgccgtggaaggc
gttatcgttcgccgggcaaccctgcataaccaggatgagattgagcgcaagggcctgaag
atcggcgataccgttctgatccaacgggccggagacgtgatcccggaaattgtcaagcct
attatcgaacagcgcagcggtgcggaacagcccattccctttccgagccaatgtcccgtc
tgtacctcccccctgcaacggccagagggcgaggccgtgacccgttgcatcaatctccat
tgcccggcccagcaactgcaacggatgatctattttgtcggcaaggcagggctggatatt
gacggttttggtaagaaaaacgtggagcaacttctggaggtcggcctgatccgggagatt
ccagatatattccgcctccgcaaagaacagctagccgttctggacggctggggagagaaa
tctgcggaaaaactcctgctggccatagacgaggccaagcatcctaccctggcccgtttc
atcggggccttgggaattcgctatgtcggggaaatgacctcggagctgctgacccgccat
ttcagcagccttgatgccctgctggctgcggaaaaagaagacctgctggcggtggagggc
atcggggagcaggccgccatgagcctgaccgagtatttttccaacagcgaaaaccggaag
atgatcgaaaccctgctgggtctcggcctgaccatagaaacaacggttcaggggaatagt
gaaaacaacccgctggaaggagccatctttctctttaccggtaccctcagccagatgtcg
cggaacgaggccaagcagctggtcaaagaccggggcggcagggtggtttccgggctcagt
aaacaagtgacccatctggtggccggggaaaaggccgggagtaagctgaaaaaggcgcag
gagcttggggtgacggttgtgggtgaggaagaatttttggggattgttgggagggggtag
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integrated database retrieval system
