Exiguobacterium antarcticum: Eab7_0441
Help
Entry
Eab7_0441 CDS
T02258
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ean
Exiguobacterium antarcticum
Pathway
ean03030
DNA replication
ean03410
Base excision repair
ean03420
Nucleotide excision repair
ean03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ean00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Eab7_0441 (ligA)
03410 Base excision repair
Eab7_0441 (ligA)
03420 Nucleotide excision repair
Eab7_0441 (ligA)
03430 Mismatch repair
Eab7_0441 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ean03032
]
Eab7_0441 (ligA)
03400 DNA repair and recombination proteins [BR:
ean03400
]
Eab7_0441 (ligA)
Enzymes [BR:
ean01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Eab7_0441 (ligA)
DNA replication proteins [BR:
ean03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Eab7_0441 (ligA)
DNA repair and recombination proteins [BR:
ean03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Eab7_0441 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Eab7_0441 (ligA)
MMR (mismatch excision repair)
DNA ligase
Eab7_0441 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Eab7_0441 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_pol_A_CTD
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AFS69599
LinkDB
All DBs
Position
453870..455864
Genome browser
AA seq
664 aa
AA seq
DB search
MIEQARIEELRQKLNQYNYEYYVKDQPTVPDSTYDQLLRELTDLETQHPELITADSPTQR
VGAAPLDAFEKVTHDLPMLSLGNVFDETEIREWVARIERSLGRATTYVAELKFDGLAISL
KYEEGRLVRGATRGDGTVGENITQNLRTIKALPLRLRQNETVEVRGEAYMPKQSFERLNE
DRAAREEALFANPRNAAAGSLRQLDSSITASRNLSVFVYGVGVNTLSARSHSEAMLQLAE
LGLPTNNEMQTCETVEEILAYIQHWTRERSNLPYEIDGIVLKVDRYDDQEELGFTAKSPR
FATAYKFAAEEVMTTVEEVDFSVGRTGKVTPRARFAPVVVAGSTVSYATLHNADFITEKD
IRLHDQVIIKKAGDVIPAVVSVVVSERTGNEQPIAFPEHCPACHSELVRLEGEADIRCVS
PECPAQLVEGIIHFVSRQAMNIDGLGEKVVRQLYEHQAIRTLADLYRLDRDELLTYERMG
ETSVDNLLTAIEASKQNSLERLMFGLGIRLVGQKAAYLLAERFDTLTGIAEAEYEDILAI
DGIGSKIADSVTKYFEHPEAQTLIQDLAELGLNQQFLGQRIDQSNAPLAGKTIVLTGTLE
TLKRSEAGKRLELLGADVTGSVSKKTDILVAGEKAGSKLTKAESLGIEIWDETRLLEELT
KYEG
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgatagaacaagcacggatcgaggagttacgccaaaagttaaaccaatacaattatgaa
tattacgtcaaagatcaaccgacggtaccagacagcacatacgatcagctgttacgtgaa
ctgacggatctcgaaacacagcatccggaactgattacggccgactcgccgacgcaacgt
gtgggcgctgcgcctctggatgcgtttgagaaggtgacacacgatttaccgatgttatcg
cttggaaatgtcttcgatgaaacggaaattcgggaatgggtcgctcggatcgaacggtca
ctcggacgtgcgacgacatatgtcgcagaattgaagtttgatggactggcgatctccttg
aaatatgaagagggacgtttagtccgcggtgcgacgcgtggtgacggtacggtcggcgag
aacatcacgcaaaacctccgcacgatcaaggccttgccgctccggttacgtcagaatgaa
acggttgaagtgcgtggggaagcctacatgcctaaacaatcgtttgaacgcttgaacgaa
gaccgagcggcgcgggaagaagccttgtttgccaatccgcgtaacgccgcggccggtagc
ttacggcaactcgactcttcgatcacggcgtcacgtaatttatccgtattcgtctatggc
gtcggggtcaacacactcagtgcccgatcgcacagtgaagcgatgttgcagctcgccgaa
ctcggactaccgacgaacaacgagatgcagacctgtgagacggtcgaagaaattttagcg
tacattcaacattggacacgtgaacgttcaaacttaccgtatgaaatcgacgggatcgtc
ttgaaggtggaccgatatgacgatcaagaagagcttggctttacggcgaaaagtccccgt
tttgcgacagcttataaatttgcggcagaagaagtcatgacgacggtcgaagaagttgat
ttcagtgtcggacggacaggaaaagtgacaccgcgggcacgttttgcaccagttgtcgtc
gccggatcgacggtcagttatgcgacgttgcataatgccgatttcatcacggaaaaagac
attcgtctgcatgaccaagtcattattaaaaaagcaggtgacgtcatcccagccgtcgtc
agtgtcgtcgtttcggaacggaccgggaatgaacaaccaatcgcatttccagaacactgc
ccagcgtgtcactcggaactcgttcgtctagaaggagaggcagatattcgctgtgtcagc
ccggaatgtccagcacaacttgtcgaaggcatcatccacttcgtgtcgcgccaagcgatg
aacatcgacggtttaggtgaaaaggtggttcggcaactgtatgaacaccaggcgattcgg
acgttggccgacttgtaccgactcgatcgcgatgaattattgacatacgaacggatgggc
gaaacgtctgttgataacttattgactgccatcgaagcatcgaaacaaaactcattagaa
cgattgatgtttggtttgggtattcgcctggtcggtcaaaaagcggcctacttattagcg
gaacggtttgatacgctgacaggaattgcagaagctgaatatgaagatatcttagcaatt
gatggcattggcagtaaaatcgctgactcggtcacgaagtattttgaacatccggaagcc
caaaccttgattcaagatttggcggagcttgggctgaatcaacagttcctcggacaacgg
attgatcaatcgaatgctccgcttgccggaaaaacgattgtcctgacgggaacacttgag
acactaaaacgttcagaagccgggaaacggcttgaattgcttggggcagacgtgacagga
agtgtcagtaaaaaaacagacattcttgtcgccggtgagaaggcaggttccaaattaacg
aaggcggagtcgctcgggattgagatttgggatgaaacgcggttactcgaagagttgacg
aagtacgaaggataa
DBGET
integrated database retrieval system
