Exiguobacterium alkaliphilum: KB235_14285
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Entry
KB235_14285 CDS
T07307
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eap
Exiguobacterium alkaliphilum
Pathway
eap03030
DNA replication
eap03410
Base excision repair
eap03420
Nucleotide excision repair
eap03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KB235_14285 (ligA)
03410 Base excision repair
KB235_14285 (ligA)
03420 Nucleotide excision repair
KB235_14285 (ligA)
03430 Mismatch repair
KB235_14285 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eap03032
]
KB235_14285 (ligA)
03400 DNA repair and recombination proteins [BR:
eap03400
]
KB235_14285 (ligA)
Enzymes [BR:
eap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KB235_14285 (ligA)
DNA replication proteins [BR:
eap03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KB235_14285 (ligA)
DNA repair and recombination proteins [BR:
eap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KB235_14285 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KB235_14285 (ligA)
MMR (mismatch excision repair)
DNA ligase
KB235_14285 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KB235_14285 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
Nlig-Ia
HHH
PTCB-BRCT
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QUE86264
LinkDB
All DBs
Position
complement(2765888..2767882)
Genome browser
AA seq
664 aa
AA seq
DB search
MEMAERVEALRQKLNQYGYEYYVLDRPSVPDAEYDRLMNELIEIETDYPELRSPDSPTQR
VGGAPLDAFVKVTHDTPMLSLGNVFSKEELVEWVERIEKDLGYSPLFVAELKFDGLAVSL
KYEDGRLVRGATRGDGTTGEDITQNLKTIRSIPLRLNEDVTFEVRGEAYMPKRSFEHLNN
ERERLGEPLFANPRNAAAGSLRQLDSKIAASRNLAFFAYGLVSPDDLVASHDEALAYLER
LGIAVSQAYTTCHTADELWDYIETYVTKRSELPYEIDGIVIKVAAYEEQEQLGFTAKSPR
WAVAYKFPAEEVVTTIEDVDFSVGRTGKVTPRARFAPVSVAGSTVTYATLHNEDFIKEKD
LHIGDRVVIKKAGDVIPAVVSALVSERTGNEQEIVFPTHCPACDSELVRLEGEADHRCLN
PECPAQLLEGLIHFVSRPAMNIDGLGEKVITQLHEADLVHNVADLYRLDREALLALDRMG
ETSVTNLLAAIEQSKQNSLERVLFALGIRLVGQKAATLIAERFETMDQIMTASVEALTAI
DGIGTKMAESITFYFEKPEAQDLVQELAEAGVNLTFKGTKRPVDTDAPLAGKTVVLTGKL
HEMTRGEAGKKLELLGASVTGSVSKNTDLLVAGEKAGSKLTKAESLGIEVWDEAALLSFL
SEQN
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggagatggcagaacgtgttgaagcgttacgacagaagttaaatcagtacggctatgaa
tattatgtgctcgatcgaccgagtgtcccggatgcggaatacgaccgtctcatgaacgag
ctcatcgaaattgagacggattatccggaactccggagtcccgactcaccgacgcaacgg
gtcggcggcgccccgcttgacgcgttcgtcaaagtgacgcacgacacaccgatgctatcg
ctcgggaacgtcttctcgaaagaagagctcgtcgaatgggtcgaacgcatcgagaaagac
cttgggtatagtccgctgtttgtcgccgaactgaagtttgatgggcttgccgtgtcactt
aaatatgaggacggacggctcgtccgcggcgcgacgcgcggtgacggcacgaccggggag
gacatcacgcaaaacttgaagacgattcgttcgattccgcttcggctgaacgaggacgtc
acgttcgaggtgcgcggtgaggcgtatatgccgaagcgctcgttcgaacatttgaacaat
gaacgggaacgtctcggagaaccgttattcgccaacccacgcaacgcggcggccggttcg
cttcgacagctcgattcgaaaatcgcagcgtcacggaacttggcgttcttcgcctatggg
ctcgtctcgccggacgatctcgtcgcctctcacgacgaagcactcgcgtatttagaacgt
ctcggaatcgccgtcagccaagcgtatacgacgtgccatacggctgatgagttatgggat
tatattgagacgtatgtcacgaagcggtccgaattgccgtacgagattgacggcatcgtc
atcaaagtcgcggcgtatgaagaacaagagcagctcggcttcacagcgaagagccctcgc
tgggcggttgcctataagttcccggccgaggaagtcgtgacgacgattgaagacgtcgac
ttcagcgtcggccggaccgggaaagtcacgccacgggcgcggttcgcaccggtctccgtg
gccggttcgaccgtgacgtacgcgacgcttcacaatgaagactttatcaaagagaaggac
ctccacatcggcgatcgtgtcgtcatcaagaaagccggggacgtcatcccggccgtcgtc
tccgcgctcgttagtgaacggaccgggaacgaacaggaaatcgtcttcccgacacattgt
ccggcgtgtgactcggagctcgtccgattagaaggcgaggccgatcatcgttgtctcaat
ccggagtgtccggctcagctattagaagggttgattcatttcgtctcacgtccggcgatg
aatatcgatggactcggtgagaaagtcatcacccaactgcatgaggccgatctcgtccat
aatgtcgccgacttgtatcgtcttgaccgcgaggcgctccttgcgctcgaccggatgggt
gagacgtcggtgacgaacttgctcgcggcgatcgagcaatcgaaacagaactcgctcgaa
cgggtattgttcgcgctcggtatccgtctcgtcggccaaaaggcggcgacgctcatcgcc
gaacgattcgagacgatggatcaaatcatgacggcttctgtagaagcgttgacggcgatt
gacggcatcggtacgaagatggccgaatcgatcaccttctatttcgagaagccggaagcc
caagatctcgtgcaggaactcgctgaagcaggtgtcaatttgacgttcaaagggacgaag
cgccccgtcgacacggacgcgccgcttgcagggaagacggtcgtcttgaccggcaaactg
catgagatgacgcgtggcgaagccgggaagaagcttgaactgctcggcgcgagcgtcacc
ggaagcgtcagcaagaacacggatttgctcgtcgccggtgagaaggccggttcgaaattg
acgaaagcggagtcactcggcatcgaagtgtgggacgaagcggcgctcctttcgttctta
tccgaacagaattga
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integrated database retrieval system
