Enterococcus avium: EH197_16145
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Entry
EH197_16145 CDS
T05982
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eav
Enterococcus avium
Pathway
eav03030
DNA replication
eav03410
Base excision repair
eav03420
Nucleotide excision repair
eav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EH197_16145 (ligA)
03410 Base excision repair
EH197_16145 (ligA)
03420 Nucleotide excision repair
EH197_16145 (ligA)
03430 Mismatch repair
EH197_16145 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eav03032
]
EH197_16145 (ligA)
03400 DNA repair and recombination proteins [BR:
eav03400
]
EH197_16145 (ligA)
Enzymes [BR:
eav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EH197_16145 (ligA)
DNA replication proteins [BR:
eav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EH197_16145 (ligA)
DNA repair and recombination proteins [BR:
eav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EH197_16145 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EH197_16145 (ligA)
MMR (mismatch excision repair)
DNA ligase
EH197_16145 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EH197_16145 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
5_3_exonuc
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QCQ13636
LinkDB
All DBs
Position
complement(3183247..3185280)
Genome browser
AA seq
677 aa
AA seq
DB search
MFLEPMTFQAAEKRSAELRDELNQYAYEYYVKDQPSVEDFVYDKKYQELVELETEYPDLI
TPESPTQRVGGKVLEGFEKVVHDIPLYSLNDVFSKEELMAFDERVKKAIGHPVSYCVELK
IDGLSISLKYENGVFVQGATRGDGTVGENITENLKTVKSIPLRLKEPLTIEVRGECYMPK
ASFIKLNQQREEDGKEVFANPRNAAAGSLRQLDTRIAAQRNLSTFLYTLADFGPLESTTQ
DHALNEMSRLGFRTNPEHQVCETIDEVWDYIEKFHEMRDQLSYEIDGIVIKVNEFTLQDE
LGFTVKAPRWATAYKFPPEEAQTTLLDIDWTIGRTGVLTPTAIMEPVRLAGTTVGRASLH
NSDYIEKKDIRLKDTILVYKAGDIIPEVAQVILEKRPNNSEPYPVPTHCPICGSELVHLD
EEVALRCINPKCPAQIKEGLSHFVSRNAMNIEGLGPRVLAQMFDKGLVSDVADLYSLEKE
QLLTLDKIKDKSAENILQAIDASRENSVERLIFGLGIRHVGAKAAGILAEHFGNLEAISK
ASKEEIVSLNTIGETIADSLVTYFENEEVHELMQELADRGVNLEYKGIRASQLAEIESPF
KDKTIVLTGKLVDYTREDAKEKIQNLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQSLGIE
IWNEKQMIQAIEESHTD
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atcttcttggaaccaatgacttttcaagcagcggaaaagcgttcagcagagcttcgcgac
gaattgaatcaatatgcgtatgaatactacgtgaaagatcagccttcggtggaggatttt
gtttacgataaaaaatatcaagaattagtagagctcgaaacagaatatcctgatttaatc
acacctgagtcgcctactcaacgtgtcggtggaaaggtattagaaggctttgaaaaagtc
gttcacgatattcctttatatagtttaaatgatgtctttagtaaggaagaattgatggcc
tttgatgagcgagtcaaaaaagctattggacatccagtttcctattgtgtggagttaaaa
attgatggactttcaatctcattaaaatacgagaacggagtctttgttcaaggggcaact
cgcggagatggaacagttggtgagaatattactgaaaacctgaaaacggtcaaatcaatt
cccttacgcttaaaggaaccgttgacgatcgaagttcggggagaatgttacatgccgaaa
gcttcatttatcaaactgaatcagcagcgagaagaagatggaaaagaggtctttgcaaat
cctcggaatgcagcagcagggagcttacgccaactagacactcgtatcgccgcccaacga
aatttaagtacttttttatatactttagcagattttggtccgttagaatcaactactcag
gatcatgcgctaaatgagatgtcccgactaggctttcgaacaaatcctgaacatcaggtc
tgcgaaacgattgacgaagtctgggattatattgaaaaatttcatgagatgagagatcaa
ttatcatatgaaattgatggaattgtcatcaaggtgaatgagtttactctacaagatgaa
ttaggttttacggtgaaggcgccaagatgggcaaccgcctataaattcccgcctgaagaa
gcgcaaacaacgctattagacattgattggaccattggacgaacgggtgtattgacgcca
acggcaatcatggaaccagtgcgtttagctggaacaacagtaggacgagcaagcttgcat
aatagtgactacattgagaaaaaagatattcggttgaaagatacaattttagtctataaa
gctggtgatataattccagaagttgcgcaagttattttagaaaaacgtccaaataacagc
gaaccctatccagtaccaacacattgtccaatttgtggaagcgaactggtccatttagat
gaagaggttgcgttgcgctgtatcaatccaaaatgtccagcacaaattaaagaaggcttg
agtcattttgtctcccggaatgccatgaatattgaaggtctgggaccgcgtgtattagcg
caaatgttcgataaagggttggtttctgatgttgcggatctttattcgctagaaaaagag
caattactgacattggacaagattaaggataaatcagctgaaaatattttgcaggcgatt
gatgctagtcgggaaaattctgttgaacgtttgatctttggactagggattcgtcatgtt
ggcgcgaaagcagcaggaatattagctgagcatttcggcaatcttgaagctattagtaag
gctagcaaagaggaaattgttagtctgaatacaattggcgaaacgatcgctgacagcctg
gtgacctactttgaaaacgaagaagttcatgaattaatgcaagaattagctgatagagga
gtaaatcttgaatacaaaggaattcgtgcgagtcaattagcagaaatcgaatcgcctttt
aaagataaaacgattgtcctgactggcaagcttgtcgattacacaagggaagacgcaaaa
gaaaaaattcaaaatctaggtggtaaggttaccggcagtgtttctaaaaaaacggatatt
gtagttgctggtgaagatgccggaagcaagttgaccaaagcacaaagtttaggaattgaa
atttggaatgaaaaacaaatgattcaagcaatcgaagaaagtcacacagactag
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integrated database retrieval system
