Enterobacter adelaidei: AAHF05_16175
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Entry
AAHF05_16175 CDS
T10740
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eax Enterobacter adelaidei
Pathway
eax03030
DNA replication
eax03410
Base excision repair
eax03420
Nucleotide excision repair
eax03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AAHF05_16175 (ligA)
03410 Base excision repair
AAHF05_16175 (ligA)
03420 Nucleotide excision repair
AAHF05_16175 (ligA)
03430 Mismatch repair
AAHF05_16175 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eax03032
]
AAHF05_16175 (ligA)
03400 DNA repair and recombination proteins [BR:
eax03400
]
AAHF05_16175 (ligA)
Enzymes [BR:
eax01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AAHF05_16175 (ligA)
DNA replication proteins [BR:
eax03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AAHF05_16175 (ligA)
DNA repair and recombination proteins [BR:
eax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AAHF05_16175 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AAHF05_16175 (ligA)
MMR (mismatch excision repair)
DNA ligase
AAHF05_16175 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AAHF05_16175 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
Prok-E2_C
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
XGV90355
LinkDB
All DBs
Position
complement(3317180..3319195)
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTELRTTLRHHEYLYHVMDAPELPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDNLTWCCELKLDGLA
VSLLYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLQGENIPARLEVRGEVFLPQAG
FEKINDEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVESERPDDTREIIFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNIVNALEAAKETTFARFLYALGIREVGEATAAGLAAYFGTLDALEK
ASIDELQKVPDVGIVVATHVFNFFAEESNREVIGKLLEEDIKWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVI
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaactcactgaactgcgaaccacgcttcgccatcatgaatat
ctctatcatgttatggacgcgccggaattaccggatgcggagtatgaccgtctgatgcgc
gaactccgcgaattagaggctcagcatccggaactcatcacacccgattcacccacccaa
cgcgtcggcgctgagccgctgggggctttcagccaggtgcgtcatgaagtgccgatgctg
tcgctggacaacgtcttcgatgaagagagttttctcgcgtttaataagcgtgtgcaggat
cgccttaaaagtagcgataaccttacctggtgctgtgagctgaagctggacggccttgcg
gtaagtcttctctatgaaaacggcgtgctggtgcgtgcggcaactcgtggtgatggtacc
accggggaagacatcaccaccaacgtgcgcactatccgcgcgatcccgctgaaactgcag
ggtgagaacattcctgcgcgactggaagtgcgcggtgaagtgttcctgccccaggcgggc
ttcgagaaaatcaacgacgaagcgcgccgcactggtgggaaagtgtttgctaacccgcgt
aatgcggcggcaggctctctgcgccagcttgatccacgcatcaccgcgaagcgaccgctt
actttcttctgctacggcgtagggattctggaggggggcgagctaccggatacgcacctc
ggacgtctgctgcagtttaaagcgtggggcctgccggtgagcaaccgtgttcagctttgc
gactccccggaagcagtactggccttctaccacaaggtggaagaggaccgtccaacgctc
ggctttgatattgatggcgtcgtcattaaggttaactcgttagcgcttcaggagcagtta
ggctttgttgcgcgtgctccgcgctgggcggtggcgtttaagtttcctgctcaggagcag
atgacctttgtccgcgacgtggagttccaggtgggacgtacgggagccattaccccggtc
gcccgtctggagccggtgcaggtggcgggcgtgctggtgagtaacgccacgctgcataac
gccgatgaaattgagcgtcttggtctgcgtattggcgacaaagtggtcattcgccgcgcg
ggcgatgttattccacaggtggttaacgttgttgagtcagaacgtcctgatgatacgcgc
gagattatttttcccacccattgcccggtatgcggctcggacgttgagcgtgtggaaggt
gaagcggtggcgcgctgtacgggcggtttaatctgcggcgcgcagcgtaaagaatcgctg
aagcacttcgtctcccgtcgggcgatggacgtcgatggcatgggcgataaaattatcgat
cagctggttgagaaagagtatgtccacacgccggcggatctcttcaggctgacggcgggt
aaactgacggggcttgatcgcatggggcctaagtcagcgcagaatatcgtgaatgctctg
gaagccgcgaaagagacgaccttcgcacgcttcctctacgcgctgggtattcgtgaagtc
ggcgaagcaacggctgcggggctggcagcgtactttggtacgctggacgcgctggaaaaa
gcgagcatcgacgaattgcagaaagtcccggatgttggaattgttgttgccacgcatgtc
tttaacttctttgctgaagagagcaaccgcgaagtcatcggcaagctgctggaagaggac
atcaaatggccggcaccggtggtggttaatgccgaagagatcgacagtccgttcgccggt
aaaacggtggtgctgaccggcagcctgagccagctttcacgtgacgatgcgaaagcgcgt
ctggtggcgctgggggccaaagtggcgggcagcgtgtcgaagaaaaccgatttggtgatt
gccggagaggcggcgggttcgaagctggcgaaagcccaggagctcggcattgcggtgatc
gacgaagcggaaatgatgcgtctgttaggagaataa
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