Erwinia amylovora ATCC 49946: EAM_0046
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Entry
EAM_0046 CDS
T01199
Name
(GenBank) putative DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eay
Erwinia amylovora ATCC 49946
Pathway
eay03030
DNA replication
eay03410
Base excision repair
eay03420
Nucleotide excision repair
eay03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EAM_0046
03410 Base excision repair
EAM_0046
03420 Nucleotide excision repair
EAM_0046
03430 Mismatch repair
EAM_0046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eay03032
]
EAM_0046
03400 DNA repair and recombination proteins [BR:
eay03400
]
EAM_0046
Enzymes [BR:
eay01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EAM_0046
DNA replication proteins [BR:
eay03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EAM_0046
DNA repair and recombination proteins [BR:
eay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EAM_0046
NER (nucleotide excision repair)
GGR (global genome repair) factors
EAM_0046
MMR (mismatch excision repair)
DNA ligase
EAM_0046
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EAM_0046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH
HHH_2
HHH_5
HHH_8
Nlig-Ia
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CBJ44721
LinkDB
All DBs
Position
76395..78059
Genome browser
AA seq
554 aa
AA seq
DB search
MKYAILVVWLFSTLVQAQCPVWSPSRADAEIAALKAQLEKWDEAYYRRGEAQVPDERYDT
LHDKLQQWQRCFSPASDLRQPLLKTDGKVLHPVSHTGVKKASGKAAVARWMEKRDGLWIQ
PKVDGVAVTLLYRDGRLVQMISRGDGVKGEDWTAKARQIPDIPKSIPRFPAMQVFQGELY
LKMTDHQQANDGGKSARSLVAGALMAKAASTVLQRVGIFVWAWPDGPNSIAKRLTGIRAL
GFPDIKDWTHRVENVDEVEGWRERWFHQRLPFATDGIVVHGMPTRQGTDWLPEQGDWAIA
WKYPPPEVTSEVRSVEFAIGRTGRINAVLNLLPVQLDDKRVSRVNIGSIEHWKQTDVIAG
DQVSISLAGMGVPRMDKVIWRVKERVLPPLPDATHFNSLSCFHLTPKCRQQFLARLEWLS
SKPVLNLSGAGRQTWQQLMQSGSMAHIFSWLALSEEELKAVPGIGEQRAHFFWQQFRLSR
QLPFKRWVKALGVPIPERAMNTLTDDNWQQLLSHSLQDWQQLPGVGQTLARKIFSYLQQQ
EVRQLIDVLEAPGP
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatgccattttggtcgtctggctgttcagtaccctggtacaggcacaatgcccg
gtttggtccccatcgcgcgccgatgcggaaatcgcagcgctgaaagcgcagctggaaaag
tgggatgaggcctattatcggcgtggagaagcccaggtccccgatgagcgctacgatacc
ctgcacgacaaactgcaacagtggcagcgctgtttttctccagccagcgatttgcgccag
ccattgctcaaaactgacggtaaagttttgcatcctgtctcccatacaggcgttaaaaag
gcttcaggtaaagcagcggtggcgcgctggatggaaaagcgtgacgggctgtggattcaa
ccgaaggtggatggcgtggcagtgacgttactctaccgagatggccggctggtgcagatg
atcagccggggagacggcgttaagggagaagactggacggcaaaagcacgccagatcccc
gatattccaaaatccattccacggttcccggcaatgcaggtttttcagggggagctgtat
ctcaagatgaccgatcatcagcaggccaacgatggggggaaaagtgcacgatctctcgtt
gcgggggcgctaatggcaaaagctgcctcaacagttctgcaacgtgtcggaatattcgtt
tgggcatggccggatggacccaactccatcgccaagcgcctgacggggatacgcgccctg
ggattcccagacatcaaagactggacccatcgggtagaaaatgtggatgaggttgagggc
tggcgtgaacgctggtttcaccagcgcttaccgtttgccaccgatggcattgttgttcac
ggtatgccgaccaggcaaggcactgactggctgcctgaacagggcgactgggctattgcc
tggaaatatcctccaccggaagtgacaagcgaagtacggtcagttgagtttgctatcggt
cgtactggccgtattaatgctgtcttgaatctgctgccggtgcagcttgacgataaacgg
gtaagccgggtcaatataggctcgattgaacattggaaacaaaccgatgtgatagcagga
gatcaggtgagtatcagcctggccggtatgggggttccacgtatggataaggttatatgg
cgggtgaaagaacgcgtgcttccccctctacccgatgccacacactttaacagcctgagc
tgttttcacctgacgccaaaatgccgtcaacagtttctggcaaggctggagtggcttagc
agcaagcctgtgcttaaccttagcggcgcgggccgccaaacctggcagcagttgatgcaa
tcgggcagcatggcgcatatattctcgtggctggctctgtcggaggaagagttgaaagcc
gtgccgggcattggagaacaacgggcgcatttcttctggcaacagttcaggttgagtcgc
caactcccctttaaacgctgggttaaagcactaggggtgccgataccggaacgggccatg
aatacgttgacggacgataactggcaacagttgctgtcacacagcctgcaggattggcaa
cagctgcccggtgtgggccaaaccctggcccggaaaatcttctcatacctccagcagcag
gaggtgcgccagcttatagatgtattagaagcacccgggccctga
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integrated database retrieval system
