Entomomonas asaccharolytica: JHT90_12210
Help
Entry
JHT90_12210 CDS
T08664
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eaz
Entomomonas asaccharolytica
Pathway
eaz03030
DNA replication
eaz03410
Base excision repair
eaz03420
Nucleotide excision repair
eaz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JHT90_12210 (ligA)
03410 Base excision repair
JHT90_12210 (ligA)
03420 Nucleotide excision repair
JHT90_12210 (ligA)
03430 Mismatch repair
JHT90_12210 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eaz03032
]
JHT90_12210 (ligA)
03400 DNA repair and recombination proteins [BR:
eaz03400
]
JHT90_12210 (ligA)
Enzymes [BR:
eaz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JHT90_12210 (ligA)
DNA replication proteins [BR:
eaz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JHT90_12210 (ligA)
DNA repair and recombination proteins [BR:
eaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JHT90_12210 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JHT90_12210 (ligA)
MMR (mismatch excision repair)
DNA ligase
JHT90_12210 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JHT90_12210 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
Nlig-Ia
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QQP85137
UniProt:
A0A974NEQ6
LinkDB
All DBs
Position
2619608..2621956
Genome browser
AA seq
782 aa
AA seq
DB search
MLTKEQAILRIEQLRKELNHHSYQYYVLDNPTIPDVEYDRLFRELQALEEQFPELKTSDS
LTQRVGGEALPQFNTVQHEVPMLSLGNAFAEEDLKNFDRRVKEGLSTSTDIVYCCEPKLD
GLAVSLVYENGIFVRGATRGDGATGEDITANIRTIRNIPLKLQGTGWPTRLEVRGEVYMP
RAGFEKLNASILANEGKPFANPRNAAAGSLRQLDSKITATRPLTFCCYGFITDDNELASS
QQQALLQLKQWGIPISPELKLATGFTECFNYYQDIGQRRDSLGYDIDGVVFKVNQIEDQQ
QLGFRSREPRWAIAYKFPAQEEITELLAVEFQVGRTGAVTPVARLKPVHVGGVVVSNATL
HNMDEVTRLGLMIGDSVIIRRAGDVIPQITSVVLERRPSDAKPVQIPEHCPVCNSMVERT
QLIKRSKGQEHISEGAIYRCTGRLSCPAQVKQSIIHFVSRKALDIDGLGDKIVEQLVDNG
LISSPADLYRLTFEQIIDLEGFAETSSNNLLAAINNSRKPDLARFIYALGIPNVGESTAK
LLARSFGSLARIKQAYPEVLTSLPDIGLEVAYEINNFFAEDHNQQTLQQLLSYIELQNEG
DIAENLTASFTLTDLLKTLTIPFIADTTAERLTKRFNSLEAIIKADKIDLSGVDKLSERA
KDSLLDYFKQPQNIAKAKAIEAQLKDFGMHWQSEPKQSQQNLPLAGQSWVLTGTLPTMKR
DTAKLYLEQLGAKVVGSVSAKTSVVVAGADAGSKLTKANELGVTVWDEEALTNLLKENGI
IL
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgctgacaaaagaacaagctatcttacgtatagaacaacttcgtaaagaacttaatcat
catagttatcaatactatgtacttgataaccccaccatccccgatgtggaatatgatcgt
ttatttcgtgagttacaagcattagaagaacaattccctgagttaaaaacctctgactca
ctgactcagcgcgtgggtggagaggcattaccacaatttaacacagtccaacatgaagta
cctatgttaagtcttggtaatgcatttgcagaagaagatttaaaaaattttgatcgacga
gttaaagaaggcttatcaacctccactgacattgtctactgctgtgaacctaagttggat
ggattagcagttagtttagtttacgaaaatggtatttttgttagaggggctacccgtgga
gatggtgctactggtgaagatattacagcaaatatccgtaccattcgcaatattccttta
aaattacagggtactggctggcctacacgtttagaagttagaggtgaagtttatatgcct
cgagctggttttgaaaagcttaatgcctcaatactggctaatgaaggtaaaccctttgct
aatccccgcaatgcagcggctggctcacttcgccaactcgattcaaaaataacagccaca
cgaccacttactttttgctgctatggttttattacagatgataatgaattagctagtagc
caacagcaagccttactacaattaaagcaatggggtattcccatcagtcctgaattaaag
ttagccactggttttactgaatgctttaactattatcaagatattggtcaacgacgggat
agtcttggctatgatatcgatggtgttgtatttaaagttaatcaaatagaagatcaacaa
caattaggctttcgttctcgtgagccgcgttgggctattgcttataaatttcctgctcaa
gaggaaataacagaactattagctgttgaattccaagttggtcgtacaggggcggttact
ccagttgcaagattaaagcctgtgcatgtgggcggtgtagttgtatctaatgccacgcta
cataatatggacgaagtaacccgcctaggcttaatgattggtgactctgttattattcgt
cgtgcaggggatgttattccacaaattaccagtgttgtattagaacgccgtcctagtgat
gctaaacctgtacaaattcctgaacactgtcccgtttgtaactcaatggttgagcgtact
caactgataaaacgcagtaaaggccaagaacatatttcagaaggtgctatttatcgttgt
acaggtagactatcctgccctgcacaagttaaacaatccattattcattttgtgtcacgt
aaagctttagatattgatggtttaggcgataaaatcgttgagcaattggttgataatggt
ttaataagctcgcctgctgatttatatcgacttacctttgaacaaatcattgacttagaa
ggctttgccgaaacttctagcaataacctactagctgctataaataatagcagaaaacct
gatttagcaagatttatctatgcgttaggcattcctaatgtgggtgaaagtaccgctaaa
ttattagcgcgttcttttggttcgctcgctcgtattaaacaagcttacccagaagtactc
acctcattacctgatattggtttagaggtagcttatgagattaataacttctttgctgaa
gaccataaccaacaaacgctacagcaattattaagttatattgaattacaaaatgaaggc
gatattgctgaaaatctaacagctagttttaccctgactgatttgctaaaaacgttaact
atcccttttattgcagataccacagcagaacgtttaacaaaacgtttcaacagccttgaa
gcgattataaaggctgataaaattgatttatctggggtagacaaactctcagaacgggcg
aaagatagtttactggattattttaagcaaccgcaaaatatagcgaaagcaaaggctata
gaagctcagttaaaagactttggtatgcattggcaaagtgaacccaagcaaagccaacag
aacttacctttggcaggtcaaagctgggtattaacaggcactctgcctacgatgaaacgt
gatactgcgaaactgtacttagaacaactaggtgctaaagtggttggtagtgtttcagca
aaaacgtcggtagtcgtagcaggtgctgatgctggctctaaactcactaaagccaatgag
ttaggtgttactgtttgggatgaagaagcattaactaatctattgaaagaaaacgggata
atattgtga
DBGET
integrated database retrieval system
