Aromatoleum aromaticum: ebA6380
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Entry
ebA6380 CDS
T00222
Symbol
lig
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eba
Aromatoleum aromaticum
Pathway
eba03030
DNA replication
eba03410
Base excision repair
eba03420
Nucleotide excision repair
eba03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ebA6380 (lig)
03410 Base excision repair
ebA6380 (lig)
03420 Nucleotide excision repair
ebA6380 (lig)
03430 Mismatch repair
ebA6380 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eba03032
]
ebA6380 (lig)
03400 DNA repair and recombination proteins [BR:
eba03400
]
ebA6380 (lig)
Enzymes [BR:
eba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ebA6380 (lig)
DNA replication proteins [BR:
eba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ebA6380 (lig)
DNA repair and recombination proteins [BR:
eba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ebA6380 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ebA6380 (lig)
MMR (mismatch excision repair)
DNA ligase
ebA6380 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ebA6380 (lig)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
Mst1_SARAH
UVR
5_3_exonuc
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
CAI09771
UniProt:
Q5NYU3
LinkDB
All DBs
Position
complement(3785194..3787239)
Genome browser
AA seq
681 aa
AA seq
DB search
MSASPEDFERAAQLRRELEAHDHAYYVLDAPTVPDAEYDRLFRELDALERRHPELLVPDS
PTRRVGGAPVPGLVPVRHAVPMLSIRTETDTTSGGVIAFDTRVRNALELGPHAPPVEYLG
ELKFDGLAISLRYENGMLVRAATRGDGYTGEDVTHSVRTIRQIPLRLPGRPPALIEVRGE
IYMRRDAFERLNARQSETGGKVFVNPRNAAAGAVRQLDARIAARRPLSFFAYGFGEIGES
GGWNMPATQGEMLDALDALGIPVCEHRVVASGPDGLIAFHDRIAAARDSLPYDIDGVVYK
VNRFDLQRRLGFVTREPRWAVAHKYPAQEEITELVDIEIQVGRTGALTPVARLKPVFVGG
VTVTNATLHNEEEIQRKGLLIGDQVIVRRAGDVIPQIVAPVVERRNGSERPFVMPQTCPV
CGSHAEKQPDEAVTRCSGGLFCPAQRKQALLHFAGRRAMDIEGLGDKLVDQLVDGGIVST
PADLYRLGLVKLANLPRMADKSAANLLAAIEKSRHATLARFIFALGIRNVGEATARELAR
HFGSLDALMDADIERLQQVADVGPIVAHSIAGFFAEMHNREVIEQLRAAGVHWDEGVPAV
AADGPASGKTFVLTGALPTMSRDDAKALIESHGGKVSGSVSKKTDYVVAGAEAGSKLAKA
QELGVAILDEDGLRRLLEQPA
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcttcgcctgaagacttcgagcgcgccgcacaactgcggcgggagctcgaagcg
cacgatcacgcgtactacgtcctcgacgcgccaacggttcccgatgcggaatacgaccgc
ctgttccgcgaactcgacgcgctggaacgccggcaccccgagctgctcgtgcccgattcg
ccgacccggcgcgtcggcggggcaccggtgcccgggctcgtgccggtgcgccacgcggtg
ccgatgctgtcgatccgcaccgaaaccgacaccaccagcggcggcgtgatcgcgttcgac
acgcgcgtgcgcaacgcgctcgaactcggcccgcacgcgccgccggtcgaatacctcggc
gagctcaagttcgacggcctcgcgatcagcctgcgctacgaaaacggcatgctggtgcgc
gcggccacgcgcggcgacggttacaccggcgaggacgtcacacacagcgtgcgcacgatc
cggcagatcccgttgcggctccccggccggccaccggcgctgatcgaggtgcgcggcgag
atctacatgcggcgcgatgcgttcgaacggctcaatgcgcggcagagcgaaaccggcggc
aaggtgttcgtcaacccgcgcaacgcggcggccggcgccgtgcgccagctcgacgcgcgc
atcgccgcgcggcgaccgctgtcgttcttcgcgtacggattcggcgagattggcgagagc
ggcggctggaacatgccagcgacgcagggcgagatgctcgacgcgctcgatgcgctcggc
attccggtatgcgagcaccgcgtcgtcgcgtccgggccggacgggctgatcgcgttccac
gaccgcatcgccgcggcgcgggacagcctgccctacgacatcgacggcgtcgtctacaag
gtcaatcgcttcgacctgcagcgccgcctcggtttcgtcacgcgcgaaccgcgctgggcg
gtcgcgcacaagtacccggcgcaggaagagatcaccgagctcgtcgatatcgagatccag
gtcgggcgcaccggcgcgctgactccggtcgcacggctgaagccggtctttgtcggcggc
gtgacggtgacgaacgcgacgctgcacaacgaagaggaaatccagcgcaaggggctgctg
atcggcgaccaggtcatcgtgcgccgcgcgggggacgtcattccgcagatcgtcgcgccg
gtcgtcgagcgccgcaacggcagcgaacgcccgttcgtgatgccgcagacgtgcccggtg
tgcggctcgcacgccgagaagcaacccgacgaggcagtgacgcgctgctcgggggggctt
ttctgcccagcgcagcgcaagcaggcgctgctgcatttcgccggccgccgcgcgatggac
atcgaggggctcggcgacaagctcgtcgaccagctcgtcgacggcggcatcgtcagcaca
ccggcggatctgtaccggctcgggctggtgaagcttgcgaacctgccgcggatggcggac
aaatcggcggcgaacctcctcgcggcgatcgagaagagccgccatgcaacgctggcacgc
ttcatcttcgcgctcggcatccgcaacgtcggcgaggcgacggcgagagagctcgcgcgg
cacttcggttcgctcgacgcgctgatggatgccgatatcgagcgcctgcagcaggtcgcg
gatgtcgggccgatcgtcgcgcacagcatcgccggattcttcgccgaaatgcacaaccgc
gaagtcatcgagcagttgcgcgcggccggcgtgcactgggacgaaggtgtgcccgcagtc
gccgctgacggccccgcgagcggcaagactttcgtgctcaccggcgcgttgccgacgatg
agccgcgacgacgcgaaggcgctgatcgagtcgcatggcggaaaagtcagcggctcggtg
tcgaagaagaccgattacgtggtcgccggcgccgaagccggctcgaagctcgcgaaagcg
caggaactcggcgtggcaatcctcgacgaagacggcctgcgccgcctgctcgaacagccc
gcctga
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