Enterobacteriaceae bacterium bta3-1: F652_3450
Help
Entry
F652_3450 CDS
T09572
Symbol
ligB
Name
(GenBank) DNA ligase, LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ebb
Enterobacteriaceae bacterium bta3-1
Pathway
ebb03030
DNA replication
ebb03410
Base excision repair
ebb03420
Nucleotide excision repair
ebb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ebb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F652_3450 (ligB)
03410 Base excision repair
F652_3450 (ligB)
03420 Nucleotide excision repair
F652_3450 (ligB)
03430 Mismatch repair
F652_3450 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ebb03032
]
F652_3450 (ligB)
03400 DNA repair and recombination proteins [BR:
ebb03400
]
F652_3450 (ligB)
Enzymes [BR:
ebb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F652_3450 (ligB)
DNA replication proteins [BR:
ebb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F652_3450 (ligB)
DNA repair and recombination proteins [BR:
ebb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F652_3450 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F652_3450 (ligB)
MMR (mismatch excision repair)
DNA ligase
F652_3450 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F652_3450 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJR01439
LinkDB
All DBs
Position
3854583..3856316
Genome browser
AA seq
577 aa
AA seq
DB search
MTWNILIVLVVWLISSLCRSWAQPPCPDWATERATHEISALQQQIAKWDEAYFLQGSSPV
PDEIYDQMAQRLKSWKQCFLTNSLPSYSALEPTSPRNTLSHPVAHTGLNKLENEAAVRDW
LKGKESVWVQPKIDGVAVTLHYQHGRLKSMISRGDGLIGQDWTNAATSISAIPKKIPDGE
AYTVLQGELFLKVTDHQQKRDGSINARSKVAGAMRLKLLSSDTANQLGIFIWGYPDGPAE
MPQRLNKLARLGFPLAEQYTHAVTDVVDVEKWREYWYQQPLPFVTDGIALHMAQQPASAL
WRPSPPGWAVAWKYPLKSSVTEVKDVQFSVGRSGRINAVLLLEPVTVDDKRVSRVSLGSV
MRWQQWDVQPHDQVSVVLAGQGTPHLERVIWRSPERVIVNAPDRGKYHSLSCWHYASGCE
QQFIARVVWMAQSLGITGVGEAFWRELAQSGMLSDLDDVLALTEHRLVNRGMGINRAKRL
SAAIERIKLAPSATWLRALGMSSTLADCGWEYTGCKLSVTQNKQYRQIWQDKEWLGLMER
LRQQGVAAFNPFSVSDLAADSQIPVVPNGSAVPADER
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgacatggaatatattgatagtgcttgtagtgtggctgatttcaagcctgtgcaggagt
tgggctcaaccaccgtgtccagattgggcaactgagcgtgcaacccatgaaattagcgcg
ctacagcagcagattgctaaatgggatgaggcctatttcttgcaaggatcttcacctgta
ccagatgaaatatatgaccaaatggcgcaacgattaaaatcatggaagcagtgtttttta
accaatagcttaccttcatattcagctcttgagccgacaagcccacgtaacacgttaagt
catccggtagcgcatacgggactgaataaactagagaatgaagcggctgtaagagattgg
cttaaaggcaaagagagcgtgtgggttcaacccaaaattgacggtgttgccgttacgctt
cattaccaacatggacgcctaaaaagcatgattagccgtggcgacggtttaatcggacag
gattggactaacgcagcgacttccattagcgccattcccaaaaagatccctgacggtgag
gcatatacggtgcttcagggagagctcttcctgaaagtgaccgatcatcaacaaaaaagg
gacggcagcattaatgcgcgttcaaaagttgcaggagcaatgcgattaaagcttttatcg
tcagacacggcgaatcaattggggatttttatctggggctaccccgatggccctgctgaa
atgccgcaaagattgaataaacttgcacgtttgggattcccattagctgaacaatacact
catgctgtaaccgatgtcgttgatgttgagaaatggcgcgagtattggtatcagcaacct
ctgccatttgtgacggacggcatcgcgctacatatggcgcagcagcctgcatctgcgtta
tggcgaccttcgcctcctggatgggctgtggcttggaaatatcccttaaaatcctcagtg
acagaggtaaaagatgtgcaattcagcgttgggcgtagtggacggattaacgcggtttta
ttgcttgagcccgtaaccgtggatgataagcgggtcagtcgcgtgagtttgggttcggtt
atgcgatggcagcagtgggacgtacaaccccacgatcaggtttcggtggtgcttgctggg
cagggcacaccacatttagaaagggttatctggcgtagcccagagcgagtcattgtgaat
gcaccagatagggggaaataccattctctgagctgttggcactatgcgtcaggttgtgaa
cagcagtttattgctcgtgtcgtttggatggctcaaagtttgggcattaccggcgtcggt
gaggctttttggcgtgagctggcacagagcgggatgttgtctgatttagatgatgtctta
gctctaacggaacaccgtctggtgaatcggggaatggggataaatcgagcgaaaaggctt
agtgcagccattgaaaggataaaacttgcgcctagcgctacatggttaagggcgctggga
atgtcctcaacgcttgctgactgtgggtgggaatataccggttgcaaactatcagtgacg
caaaacaaacaatatcgccagatatggcaggacaaagaatggttaggattaatggaaagg
ttaaggcagcagggggtggctgcctttaacccattttccgttagtgatctggctgctgat
agtcaaataccggtagtcccaaacggaagcgcagtgccagcagacgagcggtaa
DBGET
integrated database retrieval system
