Enterobacteriaceae bacterium bta3-1: F652_492
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Entry
F652_492 CDS
T09572
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ebb
Enterobacteriaceae bacterium bta3-1
Pathway
ebb03030
DNA replication
ebb03410
Base excision repair
ebb03420
Nucleotide excision repair
ebb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ebb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F652_492
03410 Base excision repair
F652_492
03420 Nucleotide excision repair
F652_492
03430 Mismatch repair
F652_492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ebb03032
]
F652_492
03400 DNA repair and recombination proteins [BR:
ebb03400
]
F652_492
Enzymes [BR:
ebb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F652_492
DNA replication proteins [BR:
ebb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F652_492
DNA repair and recombination proteins [BR:
ebb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F652_492
NER (nucleotide excision repair)
GGR (global genome repair) factors
F652_492
MMR (mismatch excision repair)
DNA ligase
F652_492
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F652_492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
Ned1_M
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AJQ98482
LinkDB
All DBs
Position
546320..548356
Genome browser
AA seq
678 aa
AA seq
DB search
MTSTTGQQLQQQLDQLRTALRHHEYQYHVLDAPEIPDAEYDRLMRELRALEEQHPELITP
DSPTQRVGAAPLSAFSQVRHEVPMLSLDNVFDDESYLAFDKRVHDRLKTAEPLTFCCELK
LDGLAVSLLYEDGVLVRGATRGDGTTGEDITANVKTIRAIPLRLQGDNIPRRVEVRGEVF
MPLAGFEAMNEEARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLMDGGEL
PASHYARLQQFKAWGLPVSDRVKLCTGSDEVLKFYRQVEQDRPTLGFDIDGVVIKVDSIE
IQEQLGFVARAPRWATAFKFPAQEQMTVVNGVEFQVGRTGAITPVARLEPVLVAGVIVSN
ATLHNADEIDRLGLRIGDTVIVRRAGDVIPQVVGVVEAQRPENTQEIVFPQHCPVCGSDV
ERVEGEAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIEQLVEKEYVKTPADLY
RLTAGILTGLDRMGPKSATNLVNALAKSKETTLARFLYALGIREVGEATAANLAAHFGSL
EALREADVEALKSVQDVGEVVAKHVRHFLGEEHNQKVIDELISDEIGIHWPAPQVIVAEE
IDSPFAGKTVVLTGSLSLMPRDEAKDRLAALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQ
ELGIPVIDEAEMIRLLGL
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgacttctacgaccggacaacaacttcaacagcaactcgaccagttgagaactgcgttg
cgccatcatgagtatcagtatcacgtgttagatgccccagagatccccgacgccgaatac
gatcgtttgatgcgtgagctgcgcgcgttggaagagcaacatcctgaacttatcacgcct
gattctcctacccaacgagtgggtgcagcgccattatctgcatttagccaagtgcggcat
gaagttcctatgctttcgctggataacgttttcgatgacgaaagctatttagcctttgac
aagcgtgttcacgaccgactgaaaaccgcagagccattaactttttgctgcgagcttaaa
cttgatggcttggccgttagcctgctctatgaagatggtgtcttggttcgaggagcgact
cgcggcgatggtacgaccggcgaagatatcacggcaaacgtgaaaacgatccgtgcgatc
cctctacgtttgcaaggcgataatattcctcgtcgtgtggaagtccgtggcgaagttttt
atgccgctagccggttttgaagccatgaatgaagaagcgcgtcgcaaagacggcaaagtt
tttgccaatccgcgaaacgccgcagcgggatcgctgcgccagctcgatcctcggatcacg
gctaaacgtccgctgacattcttctgctatggcgttggtttgatggacggtggcgaactg
cctgccagccactatgcccgtttacaacagtttaaagcctggggcttgccggtgagcgat
cgcgttaaactgtgtactggcagcgatgaggtgctgaagttttatcgtcaggttgagcag
gatcgcccaacgctaggttttgatatcgacggtgtcgtcatcaaagttgatagcattgag
attcaggaacagctcggtttcgtcgcgcgcgcacctcgctgggcgacggcgtttaagttc
cccgctcaggaacaaatgacggtggtaaacggcgttgaatttcaggttggccgtactggg
gcaatcacgcccgtggctcgtctagaacccgttttggtcgcaggcgttattgtgagtaat
gccacactgcataatgctgatgaaattgatcgtcttggcctgcgcattggtgacaccgtt
attgtgcgccgtgctggtgacgtgataccacaggtggttggcgtcgttgaagcacagcgt
cctgagaatacacaggaaatcgtcttcccgcagcattgccccgtgtgcggttctgacgtt
gagcgtgtggaaggcgaggcagtggctcgctgtactggcgggttgatctgcggtgcgcag
cgcaaagagtcgctgaagcacttcgtttcacgtcgcgcgatggacgttgatggtatgggc
gacaaaataatcgaacaactggtcgaaaaagagtatgtgaaaacaccggccgacctctat
cgcctgactgcggggatcctcacggggcttgatcgcatggggccgaagtctgcgacgaat
ctggttaatgccttagcgaagtcgaaagaaacgacgttagcaagattcctgtatgcatta
ggtattcgcgaagtcggcgaagccaccgcggcgaatttggctgcacactttggctcactc
gaggctttgcgtgaagctgatgttgaagcgctgaaaagcgtacaggacgtgggtgaagtc
gtggctaagcatgtgcgccattttctcggtgaagaacataatcagaaagtgatcgatgag
ctgatcagcgacgagattggtatccactggccagcaccgcaggtcattgtggctgaagag
attgatagcccatttgcaggcaaaaccgtggtattaaccggctcgctgagcctgatgccg
cgtgatgaagctaaagatcgtctggctgcgttaggcgctaaagtcagtggcagcgtatcc
aagaaaaccgacatggttattgcaggcgaagcggcaggatcaaaattagctaaggctcaa
gaactcggtattccggtgattgatgaagcggaaatgattcggctgttagggctgtaa
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