Enterobacteriaceae bacterium ENNIH2: C2U52_16345
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Entry
C2U52_16345 CDS
T05417
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ebc
Enterobacteriaceae bacterium ENNIH2
Pathway
ebc03030
DNA replication
ebc03410
Base excision repair
ebc03420
Nucleotide excision repair
ebc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ebc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C2U52_16345 (ligA)
03410 Base excision repair
C2U52_16345 (ligA)
03420 Nucleotide excision repair
C2U52_16345 (ligA)
03430 Mismatch repair
C2U52_16345 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ebc03032
]
C2U52_16345 (ligA)
03400 DNA repair and recombination proteins [BR:
ebc03400
]
C2U52_16345 (ligA)
Enzymes [BR:
ebc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C2U52_16345 (ligA)
DNA replication proteins [BR:
ebc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C2U52_16345 (ligA)
DNA repair and recombination proteins [BR:
ebc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C2U52_16345 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C2U52_16345 (ligA)
MMR (mismatch excision repair)
DNA ligase
C2U52_16345 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C2U52_16345 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AUV07730
LinkDB
All DBs
Position
2913020..2915035
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQKLTELRTTLRHHEYLYHVMDTPEIPDAEYDRLLRELRELEAQHPDLITPDSPTQ
RVGAAPLASFSQVRHEIPMLSLDNVFDEQSFLAFNKRVQDRLKSTDALIYCCELKLDGLA
VSILYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLLRFKEWGLPVSDRVTLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIARLGLRIGDKVVIRRAGDVIPQVVNVVESERPDGTREVVFPAHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALESAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEA
ASIEELQKVPDVGKVVAAHVFNFFAEESNRDVIGQLLAEGVRWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVI
DEAEMLRLLGA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaaaagctcactgaactacgaaccactcttcgccatcacgaatat
ctttatcatgtcatggatacgcctgagatcccggatgcagaatatgacaggctgctgcgt
gaactccgcgagcttgaggcgcagcatcctgatctcatcacgccggattcacccacacag
cgtgtgggtgccgcgccgctggcctcatttagccaggtacgccatgaaatcccgatgctg
tcgcttgataacgtcttcgatgagcagagctttcttgccttcaataaacgcgttcaggat
cggctgaaaagtaccgatgcgctcatttactgctgcgagctgaaacttgatggcctggct
gtcagcatcctctatgaaaacggcgtgctggtgcgtgccgcaacccgtggcgatgggacg
accggtgaggacattaccaccaatgtacgcacgatccgcgctattccgttgaaactgcat
ggcgacaatattccggcgcgtctggaagtgcgtggtgaagttttcctgccccaggccggg
tttgaaaaaattaacgaagaagcgcgtcgcaccggaggcaaagtgtttgctaacccacgt
aatgcggcggctggctctctgcgccagcttgacccacgtattacggcgaagcgaccactt
actttcttctgttatggcgtgggcgtgcttgaaggcggtgaactgcccgatacccacctc
ggacgcttgttgcgctttaaagagtggggtttaccggtcagcgacagggtgacactgtgc
gactcgccggaggcagtgctggctttttatcacaaggtagaagaggaccgcccgacgctg
ggctttgatatcgatggcgtggtcattaaggtcaattccctggcgctccaggaacagctt
ggtttcgttgctcgcgcgccgcgttgggcggtggctttcaaattccctgcccaggagcag
atgacgtttgttcgtgacgtcgaatttcaggtggggcgtacgggggcgattacccccgtt
gcgcggctggagccggtacatgtcgcaggcgtgctggtgagtaatgccacgttgcacaat
gcggatgaaatcgcccgtcttggtctgcgcattggcgataaagtcgtgattcgtcgtgcg
ggtgatgtgatcccccaggtggtcaatgtggtggagtctgagcgtcctgatgggacccgg
gaagtcgtatttccagcccactgcccggtatgtggttcggatgtagagcgcgtggaaggc
gaagcggttactcgctgtaccggggggttgatttgcggcgcacaacgcaaagaagcgctg
aaacattttgtctcccgccgggcaatggatgttgacgggatgggcgataaaattatcgac
caactggtggaaaaagagtatgtccatacgcctgccgatctgttccgtctgaccgcaggt
aagctgacaggtctggatcgtatgggaccgaaatcggcacaaaacgtagtcaatgcatta
gaaagtgcaaaagagaccacatttgcccgtttcctgtacgcgctgggtatccgtgaagta
ggcgaagccacagcggcggggcttgcggcgtacttcggtacgctggaggcgctggaagcg
gcttccattgaggaactgcaaaaagtacccgatgtaggcaaagtggtcgcggcgcatgtc
tttaacttttttgccgaagagagtaaccgcgatgtgatcggccaattgctggcagagggc
gtgcgctggcctgcgccggtagttgtcaacgccgaagagatagacagcccgtttgccggt
aaaaccgtagtgctgaccggtagcctgagccagatgtcgcgcgatgatgccaaagcccgc
ctggttgagcttggcgcgaaagtggcaggcagtgtgtcgaaaaagacggatctggttatc
gctggcgaggccgcgggttccaagcttgcgaaagcacaggagttgggcattgcggtgatt
gatgaagcggaaatgctacggctgctgggtgcgtaa
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integrated database retrieval system
