Erwinia billingiae: EbC_00470
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Entry
EbC_00470 CDS
T01270
Name
(GenBank) Putative NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ebi
Erwinia billingiae
Pathway
ebi03030
DNA replication
ebi03410
Base excision repair
ebi03420
Nucleotide excision repair
ebi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ebi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EbC_00470
03410 Base excision repair
EbC_00470
03420 Nucleotide excision repair
EbC_00470
03430 Mismatch repair
EbC_00470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ebi03032
]
EbC_00470
03400 DNA repair and recombination proteins [BR:
ebi03400
]
EbC_00470
Enzymes [BR:
ebi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EbC_00470
DNA replication proteins [BR:
ebi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EbC_00470
DNA repair and recombination proteins [BR:
ebi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EbC_00470
NER (nucleotide excision repair)
GGR (global genome repair) factors
EbC_00470
MMR (mismatch excision repair)
DNA ligase
EbC_00470
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EbC_00470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
HHH_2
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
CAX57578
UniProt:
D8MKC2
LinkDB
All DBs
Position
61503..63194
Genome browser
AA seq
563 aa
AA seq
DB search
MNKLWLVLALFAGIAQAACPAWTPARAEQEMNALENQLSAWDDAYYRAGEQKVPDDRYDA
LALKYQSWQHCFAPGSDLRQPALARNGKVLHPVAHVGVKKVADQQALSRWMAGKDALWVQ
PKVDGVAVTLHYKRGKLAQVISRGNGLQGEDWTEKARFIPDIPQQIALGSDSLVLQGELY
LKMTDHQQTLLGGLNARATVAGAMRRNAPSDTLNRLGIFIWAWPDGPATLRERIERLSEA
GFPMMGEWSKPVRSAEEVAGWRERWFAQPLPFVTDGVVVHSQPVKGAYWQPGENAWSVAW
KYPPATVTTEVRSVDFPIGRTGKISTVLNLVPVKLDDKQVSRVNVGSFNRWREADIVAGD
QVAVSLAGQGIPRLDEVVWRVADRTLPELPDATLFHPLSCFSLTPVCRQQLLARLVWLSG
RAALTLSGASESTWQRIMQSGQLTHLFSWLTLTAEQLSQIAGITPARANQLYHQFNQTHQ
QPFKRWVRALGVPVPNKALDALDDDNWQSLLSRKVADWQRLPEIGERRAGQIVTFLQHPD
VQALIAFLSTHLQQSISVQHEGN
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaactatggctggtactggccttgttcgcgggcatcgcgcaggccgcttgtcct
gcctggacgccggccagagcagagcaggaaatgaatgcgctggaaaatcagctcagtgca
tgggatgacgcctattaccgggcgggcgaacagaaagtgccggacgatcgttacgatgcg
ctggcacttaagtatcagtcgtggcagcactgctttgcccccggcagcgatcttcgccag
ccggcactggcccgtaacggcaaagtcctgcatccggtggctcacgtcggggtgaaaaag
gtggctgaccagcaggcgctttcacggtggatggcgggaaaagacgcgctctgggtgcaa
cccaaggtagacggtgtggccgttaccctgcattacaaacggggaaaactggctcaggtg
atcagtcgcggaaatggattgcagggagaagactggacggaaaaagcccgctttatcccc
gatattccccaacagatcgcgctggggtctgacagcctcgttttgcagggcgagctttac
ctgaagatgaccgatcaccaacagacgttactgggcggcctgaatgcccgtgccacggta
gcgggggccatgcggcgcaatgccccctcagatacgctgaacaggctgggtatctttatc
tgggcgtggcccgacggaccggcaaccttgcgggaaaggatcgaaaggctcagcgaagcg
ggctttccaatgatgggcgagtggagtaaaccggttcgctctgcggaagaagtcgctggc
tggcgtgaacgttggtttgctcaaccgttaccctttgtcaccgacggcgtggtggtccat
agccaacctgttaaaggcgcttactggcagcccggcgagaacgcctggtcggtggcctgg
aaatatcctcccgccacggtgaccacggaagtccgttcggtggattttccgattgggcgc
accgggaaaataagtacggtgctgaatcttgtcccggtaaagctggatgataagcaggtc
agtcgggtcaatgtcggttcgttcaaccgctggcgggaggcggacattgtcgccggcgat
caggttgcggtcagcctggcggggcaaggcattccacggctggatgaggtggtctggcgg
gtggccgatcgcacgcttcctgagctgcctgatgcgaccttattccatcccctgagctgt
tttagcctgacgcctgtttgtcgtcagcagcttctggcccggcttgtctggctgagtggc
agggccgccttaactctatctggtgccagcgaaagcacctggcagcggattatgcagtcc
ggccagctcactcaccttttctcctggctgacgttaacggcagaacagttaagccagatc
gccggtattaccccggcaagggcgaatcagctctatcaccagttcaaccagacccatcag
caaccttttaaacgctgggtcagggcgttaggcgtgccggttcccaacaaggcgttagat
gcgctggatgatgacaactggcagagcctgctctcgcggaaagttgccgactggcagcgc
ctgccagagataggcgaaaggcgtgcgggtcaaatcgtgaccttccttcagcatcccgat
gtgcaggcgctgatcgcttttctctcaacacatcttcagcaatcgatcagtgttcagcat
gagggtaattga
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