Erythrobacteraceae bacterium WH01K: PF049_10040
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Entry
PF049_10040 CDS
T10954
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ebk Erythrobacteraceae bacterium WH01K
Pathway
ebk03030
DNA replication
ebk03410
Base excision repair
ebk03420
Nucleotide excision repair
ebk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ebk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PF049_10040 (ligA)
03410 Base excision repair
PF049_10040 (ligA)
03420 Nucleotide excision repair
PF049_10040 (ligA)
03430 Mismatch repair
PF049_10040 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ebk03032
]
PF049_10040 (ligA)
03400 DNA repair and recombination proteins [BR:
ebk03400
]
PF049_10040 (ligA)
Enzymes [BR:
ebk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PF049_10040 (ligA)
DNA replication proteins [BR:
ebk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PF049_10040 (ligA)
DNA repair and recombination proteins [BR:
ebk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PF049_10040 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PF049_10040 (ligA)
MMR (mismatch excision repair)
DNA ligase
PF049_10040 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PF049_10040 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
WBY15937
LinkDB
All DBs
Position
complement(2043139..2045196)
Genome browser
AA seq
685 aa
AA seq
DB search
MSTPTEAEAANELMRLARQIAKHDRLYHAEDAPEITDQEYDALVRRNAELEEAFPHLVRD
DSPSRKVGHAVAASPLSKVMHEVRMMSLDNAFADEEVADFVARVRRFLSLGEDEEIAFTA
EDKIDGLSCSLRYEQGKLVRAATRGDGQVGEDVTANVAHIPEIPQTLEGECPDIFEIRGE
VYMATADFLALNARQEEAGEKLFANPRNAAAGSLRQKDAGVTAKRPLKFWAHGWGAASAE
PGETQVDVVRRIEGWGVPVSPLFTRCETLEQMLAHYEKINEQRPDLPYEIDGVVYKVDRL
DWQKRLGFVAKAPRWAIARKFPAEKAETVLEAIDIQVGRTGKLTPVGRLAPVLVGGVTVT
NVTLHNRDEIERLGVRPGDRVRVQRAGDVIPQVVANLTPGEKREAFTFPDHCPECGSEAV
AEEGEVDVRCTGGLICPAQRTERLKHFVSRAALDIDGLGEKTIAQFFALGWLESPADIFR
LRARRGDILALDGWKERSVDKLLASVEDRRRPDAARLLFGLGIRHVGAVTARDLMKHFHE
LPALRAVAEKARAGDEGAASELTDIDGIGSAVVEALGDFFHEEHNRAVWDDLLSEVSPPR
FEVETLDSPVAGKTVVFTGKLETMSRDEAKAQAERLGAKASGSVSAKTDLLVAGPGAGSK
LKKAQELGIEVMDEAGWADLVAKAG
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaccgaccgaagccgaagccgccaatgaattgatgcggctggcccgccagatc
gcgaagcacgaccggctgtatcacgccgaggacgcgcccgagatcacggaccaggaatat
gatgcgctggtccgccggaatgcggaactggaggaggcgtttccgcatcttgtgagagac
gattcgcccagccggaaggtgggccacgcggtcgctgcgtctcctttgagcaaggtgatg
cacgaggttcgcatgatgagcctcgacaacgcgttcgcggacgaggaagtcgccgatttc
gtcgcccgggtgcggcggttcctgtcgctgggggaagacgaggaaattgcgttcacggcg
gaagacaagatcgacggcctgtcctgttcccttcgctacgaacagggaaaactcgtccgt
gccgcgacccggggcgatgggcaggtgggcgaagacgtcaccgcgaacgtggcgcatatt
cccgagattccccagacgcttgaaggcgaatgtcccgatattttcgagatccggggcgag
gtttacatggcgacggcggacttcctcgccctgaatgcgcggcaggaagaggcaggagag
aagctgttcgccaatccgcgcaacgccgctgccggttcgctgcgccagaaggatgcaggc
gtgacggcgaaacggccactgaaattctgggcccacggatggggtgcggcttcggcggag
ccgggggaaacgcaggtcgatgtcgtgcgccggatcgaaggctggggcgtgccggtctcg
ccgctgttcacgcggtgcgaaacgctggagcagatgctcgcccattacgagaagatcaac
gagcagcgccctgatcttccctatgaaatcgacggcgtcgtctacaaggtggaccgcctg
gactggcagaaacgcctgggcttcgtggccaaggcgccgcgctgggccatcgcccgcaag
ttcccggcggaaaaggccgagacggtgctggaggcaatcgacatccaggtcgggcggacc
ggcaagctgaccccggtcggcaggctcgcgccggtattggtcggcggcgtgacggtcacc
aatgtgacgctgcacaatcgcgacgagatcgagaggctgggcgtgcggccgggcgacagg
gtccgcgtgcagcgcgccggggatgtcatcccccaggtcgtcgccaatctgacgccgggt
gaaaagcgcgaggccttcacctttcccgatcattgcccggaatgcggcagcgaagcggtc
gcggaagagggcgaggtcgatgtgcgctgcacgggcggtctgatctgcccggcgcagcgc
acggaaaggctgaaacatttcgtcagccgtgcggccctcgacatagacggtctgggcgag
aagacgatcgcccagttcttcgccctcggctggttggaaagcccggccgatatcttccgc
ctgcgcgcgcgtcgcggcgacatcctcgcgctcgatggctggaaggaaaggtctgtggac
aagctgttggcatcggtggaagaccggcgccggcccgacgcggctcgcctgctcttcggc
ctcggcatcaggcacgtcggcgctgtcacggcgcgcgacctgatgaagcatttccacgaa
ctgcccgcccttcgcgccgttgccgagaaagcgcgtgcgggagacgagggcgcggcttcc
gaactgaccgatatcgacggcatcggcagcgcggtggtcgaggcgctgggggatttcttc
cacgaggagcacaaccgcgcggtgtgggacgacctgctgagcgaagtctcgccgccccgt
ttcgaggtcgagacgctggacagccccgtcgcgggcaagacggtcgtcttcaccggcaag
ctggaaacgatgagccgcgacgaggcaaaggcgcaggccgaaaggctgggggccaaggcg
agcggttcggtcagcgccaagacggacctgctggtggctggcccgggcgccggatcgaaa
ctgaagaaggcgcaggaactgggcatcgaagtgatggacgaggcaggctgggccgatctg
gtggcgaaggccggttga
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