Ectothiorhodospira sp. BSL-9: ECTOBSL9_3207
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Entry
ECTOBSL9_3207 CDS
T04374
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ebs
Ectothiorhodospira sp. BSL-9
Pathway
ebs03030
DNA replication
ebs03410
Base excision repair
ebs03420
Nucleotide excision repair
ebs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ebs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ECTOBSL9_3207 (ligA)
03410 Base excision repair
ECTOBSL9_3207 (ligA)
03420 Nucleotide excision repair
ECTOBSL9_3207 (ligA)
03430 Mismatch repair
ECTOBSL9_3207 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ebs03032
]
ECTOBSL9_3207 (ligA)
03400 DNA repair and recombination proteins [BR:
ebs03400
]
ECTOBSL9_3207 (ligA)
Enzymes [BR:
ebs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ECTOBSL9_3207 (ligA)
DNA replication proteins [BR:
ebs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ECTOBSL9_3207 (ligA)
DNA repair and recombination proteins [BR:
ebs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ECTOBSL9_3207 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ECTOBSL9_3207 (ligA)
MMR (mismatch excision repair)
DNA ligase
ECTOBSL9_3207 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ECTOBSL9_3207 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
AphA_like
DUF3592
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
ANB03529
UniProt:
A0A161HHW0
LinkDB
All DBs
Position
complement(3501560..3503614)
Genome browser
AA seq
684 aa
AA seq
DB search
MNDAVPEAAREKVAALRSQLDHHDYRYYVLDDPEIPDAAYDQLMRELQALEAEYPDLVTP
DSPTQRVGGSPLQAFPEARHLLPMLSLDNAFEEAEVQAFDQRLRERLDTHDTLDYAVEPK
LDGLAVSLLYEHGQLVRGATRGDGTTGEDITSNIRTIRAIPLRLQGEDHPPRMEIRGEVY
MEKARFEELNARARENGGKVFVNPRNAAAGSLRQLDPRITAERPLSFFAYGVGHVETGSL
SDTQGGTLDQLARWGLRVCPERDVVRGGEGCLEYYQRIREARDALPYEIDGVVYKVNSLR
LQQELGFVSRAPRWAIAHKYPAQEQITVLRDVEFQVGRTGAVTPVARLEPVFVGGVTVSN
ATLHNMDEVLRKDVRIGDTVIVRRAGDVIPEVAGVVKDRRPEDARAIVMPETCPVCGSSV
VRPEGEAVSRCSGGLYCGAQRREAIKHFASRRALDIEGLGDKLVEQLVDQGLVDHVDGLY
ALDTASLAGLERVGEKSAANLVAALEKSKQTTLARFIFALGIREVGEATARGLAGHFGSL
DALMAADADTLMQVPDVGPKVAEHVSAFFSQAHNREVIQALRAAGVRWDEHEPAAQPSEE
DQPLAGCTYVLTGTLSSMTRDEAGARLRALGAKVSGSVSKKTTGVIAGDAAGSKRDKAEQ
LGVPVLDEAALMQLLGEGASERGA
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgccgtacccgaggccgcccgggagaaggtggcggccctgcgcagccagctg
gaccatcatgattatcgctactacgtcctggacgacccggagataccggatgccgcctat
gaccagttgatgcgtgagctgcaggccctggaggccgaataccccgacctggtcacgccc
gactcacccacccagcgggtgggcggatcccccctgcaggcctttcccgaggcccgccac
ctgctgcccatgctctcactggacaatgccttcgaggaggccgaggtgcaggcctttgat
cagcgcctgcgcgaacgcctggacacccacgacaccctggactatgcggtggagcccaag
ctggatggcctggcggtgagcctgctctatgagcacggccagctggtgcgcggcgccacc
cggggggatggcaccaccggcgaggacatcacctccaatatccgcaccattcgcgccatc
cccttgaggcttcagggcgaggatcatccgccccgtatggagattcggggggaagtctat
atggagaaggctcgctttgaggagctgaatgcgcgggcccgggagaacggcggcaaggtc
ttcgtgaatccccgtaatgccgctgccggcagcctgcggcagttggacccccggatcacc
gctgaacgtcccctgtccttctttgcctatggcgtggggcatgtggagacaggcagcctg
agcgacacccagggcgggaccctggatcaactggcccgctggggcctgcgggtctgtccg
gagcgagacgtggtccgcggcggcgaaggttgcctggaatactaccagcggatccgcgag
gcccgggatgcactgccctacgagatcgacggggtggtgtacaaggtcaattcccttcgc
ctgcagcaggaactgggcttcgtctcccgggcgccgcgctgggccatcgcccacaaatac
ccggcccaggagcagatcacggtgctcagggatgtggagttccaggtaggccgcaccggg
gcggtgaccccggtggcccgcctggagccggtcttcgtggggggcgtgacggtgagcaat
gccaccttgcataacatggacgaggtgctgcgcaaggacgtgcgcatcggcgacacggtg
atcgtgcgccgcgccggggatgtaatccccgaggtggcaggggtggtgaaggatcgtcgt
cccgaggatgcccgcgccatcgtcatgcccgagacctgcccggtgtgcggttcatcggtg
gtcaggcccgaaggggaggcggtgtcccgctgctccggtgggctttactgtggtgcccag
cgccgcgaggccatcaagcatttcgcctcccgccgggccctggacatcgagggcctgggg
gacaagctggtggagcagctggtggaccagggcctggtggatcatgtggatggtctttac
gccctggataccgctagcctggcgggtctggagcgcgtgggcgagaaatcggcggccaat
ctggtggccgccctggagaagagcaagcagaccaccctggcccggttcatctttgccctg
ggcatccgcgaggtgggcgaggccacggcccggggcctggccggccatttcggcagtctg
gatgccctgatggcggcggatgccgacaccctgatgcaggtgccggacgtggggcccaag
gtggccgagcatgtctcggcattcttctcccaggcgcataaccgggaggtcatccaggcc
ctgcgggcagcgggtgtgcgctgggatgagcacgaacccgccgcccagccatcggaggag
gatcagcccctggccggttgcacctatgtgctcaccggcaccctgtcatccatgacccgg
gatgaggccggcgcccgcttgcgggcgctgggggccaaggtgtcgggcagtgtgtccaag
aagaccacgggagtgatcgcgggggacgccgccggctccaagcgcgacaaggcggaacag
ctgggggtgccggtgctggacgaggcggcgttgatgcaattgctgggggagggggcgtcg
gaacggggcgcttag
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