Shimwellia blattae: EBL_c39220
Help
Entry
EBL_c39220 CDS
T02111
Symbol
ligB
Name
(GenBank) NAD(+)-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ebt
Shimwellia blattae
Pathway
ebt03030
DNA replication
ebt03410
Base excision repair
ebt03420
Nucleotide excision repair
ebt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ebt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EBL_c39220 (ligB)
03410 Base excision repair
EBL_c39220 (ligB)
03420 Nucleotide excision repair
EBL_c39220 (ligB)
03430 Mismatch repair
EBL_c39220 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ebt03032
]
EBL_c39220 (ligB)
03400 DNA repair and recombination proteins [BR:
ebt03400
]
EBL_c39220 (ligB)
Enzymes [BR:
ebt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EBL_c39220 (ligB)
DNA replication proteins [BR:
ebt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EBL_c39220 (ligB)
DNA repair and recombination proteins [BR:
ebt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EBL_c39220 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EBL_c39220 (ligB)
MMR (mismatch excision repair)
DNA ligase
EBL_c39220 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EBL_c39220 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
DUF3701
HHH
Motif
Other DBs
NCBI-ProteinID:
AFJ48950
UniProt:
I2BEJ6
LinkDB
All DBs
Position
complement(4055111..4056826)
Genome browser
AA seq
571 aa
AA seq
DB search
MRVWAGLWLGLVSTVVTGQCPDWQPAHAGQEIARLSQQIDQWDKDYWLAGASEVNDETYD
RLTARLDMWRQCFGYSPQPPRQPPAKGHFLHPVAHTGARKLRDRLAVARWMAGKTDLWIQ
PKVDGVAVTLVYQNGRLSKAISRGDGQRGEDWTSRVRGIAAVPAVVSGPLRDSVLQGELF
LRREGHIQQRMGGENARALVAGAMMQQADSALLNRLAIFIWAWPDGPADIRQRMAALSAG
GFHYSARYTLPVQDSAEAERQRTAWFTSPLPFVTDGVVIRQGHEPAGRYWRPGQAGWMVA
WKYPPVSQVATVRDVQFSVGRSGKVSAVAHLEPVQLDDKRVQRVLIGSVARWRALDIVKG
DQLQISLAGQGIPRLDRVVWRVSERQRAEPPQEIFTPLSCYFSSPGCEAQFLARLNWLGS
GAVLDIGGMGPATWRLLHQQWRFEHIFSWLGLSREQLQSTPGLSASRGLQLWHRFNLVRK
RPLVRWVMALGLPLSAAALRATADSDWGAFSSRSEQQWRGVPGVGAKRASQLMAVLHHHV
LGKLVAWLQEQQIPAFTPPGAEPENPPGSVG
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgtgtgggcgggattgtggctggggctggtcagcacggtggttacggggcagtgc
cccgactggcagccagcgcatgccgggcaggagatagcccggctcagccagcagatagac
cagtgggataaggactactggctggccggggccagtgaggttaatgacgaaacctacgac
cggctcaccgcgcggctggacatgtggcgccagtgttttggttactccccgcagccgccc
cgccagcccccggcaaaggggcattttctgcatccggttgcccataccggggcccgtaaa
ttgcgcgatcggctggcggttgcgcgctggatggccgggaaaaccgatctctggatccag
ccgaaggtggacggtgtggcggtgacgctggtctatcagaacggccgcctcagcaaggcc
atcagccgtggagacgggcagcgcggggaagactggaccagccgggtacgggggattgcg
gcagtccccgctgtggtttccggcccgctgcgcgacagtgtgttgcagggggagctgttt
ttgcggcgtgaggggcatattcagcagcgcatgggcggggaaaacgccagggcactggtg
gccggggcgatgatgcagcaggcagacagcgcgctgcttaaccggctggcgatatttatc
tgggcctggccggacggcccggcagatatcaggcagcgtatggcggcgctgagcgcgggc
gggtttcactacagtgcccggtatacgctgccggtgcaggatagcgcagaggcggaacgc
cagagaacggcgtggtttacctcgccgctgccttttgtaacggacggtgttgtcatccgc
caggggcatgagcccgccgggcgttactggcggccagggcaggcaggctggatggtggcg
tggaaatacccgccagtttcccaggtggcaacggtgcgtgatgttcagttcagtgtcggg
cggagcggaaaagtcagcgcggtggcacacctggagccggtccagctggatgataagcgc
gttcagcgggtgcttattggctccgtggcgcgctggcgcgcactggatatcgtgaagggc
gatcagctacagataagcctggccgggcaggggatcccgcgcctggatcgggtggtctgg
cgggtgagcgagcgccagcgggcagagccgccacaggagatatttaccccgctgagttgt
tatttctcctccccggggtgtgaggcgcagtttctggcgcggcttaactggctgggctcc
ggggcggtgctggatattggcggtatgggcccggccacctggcggttactgcaccagcag
tggcgttttgaacatattttctcctggctggggctgagccgggaacagctccagtcaacg
cccgggctctctgcttcccgggggcttcagctgtggcaccggtttaacctggtcaggaaa
cggccgctggtgcgctgggtgatggcgctcgggctgccgctaagcgcggcggcgttacgg
gccaccgcggatagcgactggggcgccttcagctcccggtctgagcaacagtggcggggt
gtaccaggtgttggcgcgaagcgggccagccagctgatggcagtgttacaccatcatgtg
ctggggaaactggtggcctggctacaggaacagcagatcccggcgtttacaccaccgggg
gcagagcctgaaaacccaccggggagcgtgggctag
DBGET
integrated database retrieval system
