Empedobacter brevis: F0358_13645
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Entry
F0358_13645 CDS
T06196
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ebv
Empedobacter brevis
Pathway
ebv03030
DNA replication
ebv03410
Base excision repair
ebv03420
Nucleotide excision repair
ebv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ebv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F0358_13645 (ligA)
03410 Base excision repair
F0358_13645 (ligA)
03420 Nucleotide excision repair
F0358_13645 (ligA)
03430 Mismatch repair
F0358_13645 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ebv03032
]
F0358_13645 (ligA)
03400 DNA repair and recombination proteins [BR:
ebv03400
]
F0358_13645 (ligA)
Enzymes [BR:
ebv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F0358_13645 (ligA)
DNA replication proteins [BR:
ebv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F0358_13645 (ligA)
DNA repair and recombination proteins [BR:
ebv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F0358_13645 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F0358_13645 (ligA)
MMR (mismatch excision repair)
DNA ligase
F0358_13645 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F0358_13645 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
5_3_exonuc
HVO_2753_ZBP
HIT
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QES93686
LinkDB
All DBs
Position
2849279..2851273
Genome browser
AA seq
664 aa
AA seq
DB search
MEIQDKILALREELTQHNYNYYVLDNPTISDFEFDLKLKELKRLEDENPIFFDVNSPTQR
VGGMVTKNFPTIVHEFRMYSLDNSYSVEDLQEWEKRIEKALGEKVEFVCELKYDGASISI
LYENGQLTQAVTRGDGTQGDEITNNIRTIQSIPLKLKGNYPERFYMRGEITIPLNTFASI
NKERANNGLELYANPRNTASGSLKLQDNTEVAKRGLQCFPYYFIGNNLPYTTQWEMLQAA
DELGFKIPHTSKLCTSLEEVLAFVDYWDNERKNLPYETDGIVIKVNSFSQQDELGYTAKS
PRWAMAYKFKAEAAETELLSIDYQVGRTGAITPVANLAPVSLAGTIVKRASVHNEDIIKK
LDIRIGDIVYVEKGGEIIPKIVGVNTDVRQPGTAEIEFIKNCPSCGTALIRKEGEAQHYC
PNENGCEPQIIGRLEHFVSRKAMDIESIGGETAVLLHKANLLNNIADFYTLQKEDILPLE
RMAEKSAQNIINSVEKSKEQPFERVLYAIGIRHVGETVAKKLVKHFQHIDRLMHATMEEL
VSVTDVGEKIAISIKEYFKEEQHQIIIQRLRDYGLNFEIGEEAKPISDSLEGKTFLFTGT
LTKFTRSEAQKMVEDHGGKNISAVSKNLNFLVAGDKAGSKLKKAEEIGTVSVLTEDEFLI
MING
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggaaattcaagataagattttagctttaagagaagagcttacccaacataattacaat
tattacgttttagataatccgacaatttctgatttcgaatttgatttgaaattgaaagaa
ttgaaacgtctggaagacgaaaatcctattttcttcgatgtaaattctcctactcaacgt
gttggtggaatggttactaaaaacttcccaacaattgtgcacgaatttagaatgtattca
ctggacaactcatattctgtcgaagatttacaagaatgggaaaaacgaatcgaaaaagcc
ttaggtgaaaaagtagaatttgtttgcgaactaaaatacgacggcgcttcaatctctatt
ctttacgaaaatgggcagctgacccaagccgttacacgcggagatggtactcagggagac
gagattacaaacaatatcagaaccattcaatctattccattaaaattaaaaggaaattat
cctgaacgattttacatgcgcggcgaaattacaattccgttgaatacatttgcttctatt
aataaagaacgcgccaataatggtttagaattgtatgcaaaccctcgaaatacagcttcg
ggctctctaaaattacaagacaataccgaagtggcaaaacgtggtttacaatgttttcct
tattattttattggaaataatttaccttatacaacacaatgggaaatgttacaagctgcg
gatgagctaggtttcaaaattccgcacacttcaaaattatgtacttctttggaagaagtt
ttagcctttgtagattattgggataatgaacgtaaaaacttgccttatgaaacggacgga
attgtcatcaaagtgaattcattttcgcaacaagatgaattgggatatactgcaaaatct
cctcgttgggcaatggcttacaaatttaaagctgaagctgctgaaacagaattgttgagt
atcgattatcaggttggacgtacaggagcaattacacctgttgcgaatcttgctccggtt
tcattagccggaacaattgtgaaacgtgcatctgttcacaatgaagatatcatcaaaaaa
ttagatattcgaattggcgatatcgtttatgtagaaaaaggaggagaaattattccgaag
attgtaggggttaatacagatgttcgccaacccggaacagccgaaattgaatttattaaa
aattgcccttcatgtggaacagccttaattcgaaaagaaggagaagcacaacattattgt
ccaaatgaaaatggttgtgaacctcaaatcattggaagattagaacactttgtttctaga
aaagcaatggatattgaaagtattggaggggaaaccgctgtcttattacacaaagcaaat
ttgttgaataacattgcagatttctatactttacaaaaagaagatattctgcctttggaa
agaatggctgaaaagtccgctcaaaatatcattaattcagtcgaaaaatcaaaagaacaa
cctttcgaaagggtcttgtatgccatcggaattagacatgttggtgaaacagttgcaaag
aaattggtgaaacattttcaacacatcgaccgtttgatgcatgctacaatggaagaattg
gtttctgtaacagatgttggagaaaaaattgccatttctattaaagaatattttaaggag
gaacaacatcaaatcatcattcaacgtttacgtgattatggtttaaactttgaaattggt
gaagaagccaaacctatctcggattctttagaagggaaaacctttctatttaccggaaca
ttgacaaaatttacccgtagtgaagcgcaaaaaatggtggaagaccatggtgggaaaaat
atttcggcagtttccaaaaatctcaatttcttagttgcgggtgataaagcgggtagtaaa
ttgaaaaaagcagaagaaataggaactgtctctgttcttacggaagacgaatttttaatt
atgataaacggctaa
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integrated database retrieval system
