Xiamenia xianingshaonis: J7S26_01865
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Entry
J7S26_01865 CDS
T08443
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ebz
Xiamenia xianingshaonis
Pathway
ebz03030
DNA replication
ebz03410
Base excision repair
ebz03420
Nucleotide excision repair
ebz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ebz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J7S26_01865 (ligA)
03410 Base excision repair
J7S26_01865 (ligA)
03420 Nucleotide excision repair
J7S26_01865 (ligA)
03430 Mismatch repair
J7S26_01865 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ebz03032
]
J7S26_01865 (ligA)
03400 DNA repair and recombination proteins [BR:
ebz03400
]
J7S26_01865 (ligA)
Enzymes [BR:
ebz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J7S26_01865 (ligA)
DNA replication proteins [BR:
ebz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J7S26_01865 (ligA)
DNA repair and recombination proteins [BR:
ebz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J7S26_01865 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J7S26_01865 (ligA)
MMR (mismatch excision repair)
DNA ligase
J7S26_01865 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J7S26_01865 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_ligase
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QTU84697
UniProt:
A0A9E6SUX8
LinkDB
All DBs
Position
570469..572637
Genome browser
AA seq
722 aa
AA seq
DB search
MTEHLDPTIHPNAPEQPSLLDERALADATSDAEARVAALRKEIERHTYLYYAKDAPVISD
AAFDSLMRELRELEAAHPELVDATSPTQRVGGYVGEQFSAVQHEARMYSLDNAMDLAELD
AWMDRVEEAFGRFVPLTCELKIDGSSIALTYEDGRLIRAATRGDGTTGEDVTANVRTVRD
VPLRLRDEGMAGLVRREGAIELRGEVYMPKDSFEALNVAAAENGKASFANPRNAAAGSLR
QKDASITAMRDLSTFMYAVADASALAATSQWELLEWLSDAGFHVNPDVELCETREAVRVF
CERCQKRREDLPYEIDGVVVKVNAFSQQAAMGFTSRAPRWAIAYKFPPEEKTTLLRDITV
QVGRTGKLTPVAELDPVVVAGSTVARATLHNEDEVHRKDVRIGDTVIVRKAGDVIPEVLG
PVLSLRPEGAQTWAMPKACPSCGSLVVREEGEADFRCISIDCPAQALERLIHWCSRGAMD
IDGMGEEIVSRLVETGRVSDVADLYSLDETELALLDTGRVNKEGHSITLGATIAAKLARA
IDDSRGRDLSRVVFGLGIRHVGKRTAELLVEAFPSMDALMGADEEALAAVDGIGPKMART
IFLFLRTPDNVSVIERLAAHGVRLANDPADGAAALPQTLEGLTFVLTGSLVESGMTRDEA
SAALKAFGAKVSSSVSKKTSFVVAGEAAGSKYDKAVSLGVPVLDEAQLMAVLETGQVPDG
AL
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgacggaacatcttgacccgacgatccatccgaatgcgccggagcagccgtcgctgctc
gacgaacgggcgctggccgacgcgacgagcgacgcggaagcccgcgtggctgcgctgcgc
aaggaaatcgagcgccatacctatttatactacgcgaaggacgcgcccgtcatcagcgac
gcggcgttcgattcgctcatgcgtgagttgcgcgagcttgaagcggcgcacccggagctg
gtcgacgcgacaagccccacccagcgcgtgggcggctacgtcggcgagcagttttccgcc
gtgcagcatgaagcccgcatgtattcgctcgacaacgcgatggacctggccgagctggac
gcgtggatggaccgcgtggaagaggcgtttgggcggttcgtgcccttgacgtgcgagctg
aagatcgacgggtcctccatcgcgctcacctatgaagacggacgcctgatcagggcggcg
acccgcggcgacggcaccacgggcgaagacgtgaccgcgaacgtgcgcaccgtgcgcgac
gtgccgctgcgcctgcgcgacgaggggatggcgggcctcgtccgccgcgagggcgccatc
gagctgcgcggcgaggtctacatgcccaaggatagcttcgaggcgctcaacgtcgccgcc
gcagagaacggcaaggcctcgttcgcgaatccgcgcaacgccgccgccggctcgctgcgc
cagaaggacgcgtccatcacggccatgcgcgacctgtccacgttcatgtatgccgtcgcc
gacgcttcggcgctggcggcgacgtcgcaatgggagctgctcgaatggctgtctgacgcg
ggctttcacgtgaaccccgacgtcgagctgtgcgaaacgcgcgaggccgtccgcgtcttc
tgcgagcgctgccaaaagcgtcgcgaggacctgccctacgagatagatggcgtggtcgtg
aaggtgaacgcgttttcccagcaggccgccatgggcttcacgtcgcgggcgccgcggtgg
gccatcgcctacaagttcccgcctgaagagaagacgacgcttctgcgcgacatcacggtg
caggtggggcgcacgggcaagctcacgccggtcgccgagctggatccggtcgtcgtggcc
gggtcgaccgtggcccgcgcgacgctgcacaacgaagacgaggtgcaccgcaaagacgtg
cgcatcggcgacacggtcatcgtgcgcaaggccggcgacgtcattcccgaagtgctggga
ccggttttgtcgctgcgtcccgaaggagcgcagacgtgggccatgccgaaggcctgcccg
agctgtggcagcttggtcgtgcgcgaggaaggcgaagccgacttccgctgtatctccatc
gattgcccagctcaggcgcttgagcggctcatccattggtgcagccgcggcgccatggac
atcgacggcatgggcgaagagatcgtgtcgcggctggtggagacgggccgcgtgtccgac
gtggccgacctgtactcgcttgacgagaccgagcttgcgctgcttgacaccgggcgcgtg
aacaaagaagggcattccatcacgctgggggcgaccatcgcggccaagctggcgcgcgcc
atcgacgacagccgcggccgcgacctttcgcgcgtggtgttcggcttggggattcggcac
gtgggcaagcgcacggccgaacttttggtcgaagcgtttccgtcgatggacgcgctcatg
ggggccgacgaggaagcgcttgccgcggtggatggcatcggcccgaagatggcccggacg
atctttctgttcctgcgcacgcccgacaacgtcagcgtgatcgagcggctggcggcgcac
ggcgtccggcttgccaacgacccggcagacggcgcggcggcccttccgcagacgctcgag
gggctgacgttcgtgctgaccggcagcttggtggaaagcggcatgacgcgcgacgaggcg
tctgcggcgctgaaggcctttggcgcgaaggtgagcagcagcgtgtcgaaaaagacgagc
ttcgtggtggccggcgaagcggctgggtcgaagtacgacaaagccgtgtcgctgggggtg
ccggtgctcgatgaagcgcagctcatggccgttctggaaaccggccaggtgcctgacggg
gcgctgtag
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