Erigeron canadensis (horseweed): 122578135
Help
Entry
122578135 CDS
T07610
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122578135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122578135
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122578135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA
AAA_15
Arf
AAA_23
Zeta_toxin
AAA_30
ORC-CDC6-like
nSTAND3
TsaE
ATP-synt_ab
AAA_7
RsgA_GTPase
AAA_28
Motif
Other DBs
NCBI-GeneID:
122578135
NCBI-ProteinID:
XP_043605964
LinkDB
All DBs
Position
8:complement(38472111..38476674)
Genome browser
AA seq
327 aa
AA seq
DB search
MVANENEENVPMVVINKLKFTYPGIDGHPPPGSVPLIQDLSLTLNSGDRCLLVGSNGAGK
TTILKILGGKHMVEPDMVRVLGRSAFHDTSLTSSGQLAYLGGEWRREVAFAGFDVAIQMD
ISAEKMLFGVAGVDPQRRAELIKVLDVDLSWRMHKVSDGQRRRVQICMGLLKEFKVLLLD
EITVDLDVLARADLLTFLKKECEDRGAIIIYATHIFDGLENWPSHIVYVAQGKLQLALPM
EEIRKMSNLSLMRTVEQWLRKERDEERKRRKERKANGLPEFDKRIDGTRVAGDPVRVVNN
GWAAGRLNSTVAGEENFVYSSNRVVRQ
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atggttgcaaatgaaaacgaagaaaatgttccaatggtggtaatcaacaaactgaaattc
acatacccaggtatcgacggacacccacccccaggttccgtccctcttatccaagacttg
tcactcactcttaactccggtgatcgctgtcttcttgtcggatcaaatggcgctgggaaa
acaacgatattgaagatattgggagggaagcatatggtggagcctgacatggttagagtt
cttggaaggtctgcttttcatgatacttctttgacttcttctggtcaacttgcttatctt
ggtggtgagtggagaagggaagttgcttttgctggctttgatgttgctatacaaatggat
atttccgctgaaaaaatgttatttggggtagcgggggttgatcctcaaagaagagctgag
ctgattaaggttttagatgtcgatttgtcatggaggatgcacaaggtatctgatggtcag
cgaagaagggtgcaaatatgcatggggcttctaaaggaattcaaggttcttcttcttgat
gaaatcacagttgacctagatgtacttgccagggctgatcttttgacattccttaaaaag
gaatgtgaagaccgcggtgctatcatcatatatgctacacatatattcgatggtctcgag
aattggccttcacacatcgtttatgttgctcaaggaaagttgcagttggcattgcctatg
gaagagataagaaagatgagcaatctatctttaatgagaacagtagagcaatggctgagg
aaagaacgagatgaggagaggaagagaaggaaagagagaaaagcaaatgggcttccagaa
tttgataagcgtattgatggtactcgggtagctggggatccagttcgtgtggtcaacaac
ggttgggctgctggaaggttgaattccaccgttgctggtgaagagaactttgtctatagt
tcaaacagggttgtcagacaatag
DBGET
integrated database retrieval system
