KEGG   Erigeron canadensis (horseweed): 122578648
Entry
122578648         CDS       T07610                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
ecad  Erigeron canadensis (horseweed)
Pathway
ecad03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    122578648
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ecad03021]
    122578648
Enzymes [BR:ecad01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     122578648
Transcription machinery [BR:ecad03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     122578648
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 122578648
NCBI-ProteinID: XP_043606591
LinkDB
Position
8:49558655..49567683
AA seq 1434 aa
MDNEVYVDQQVPSGVLTSIKFKVLSEEDAEKASVKEIAVANEVTDPALGFPNPASQCHTC
GAKDYRTCEGHMGLIKFPFTILHPYFLPEVVQILNKICPGCKNLIKDKAKKGGLIQVLKI
CKYCDKSFRDDYPPLKFKVSTKDVFGKSAIIAEIRSSKKLISDKSLPHDYWDFVPNDPQQ
EESFSTFNRRVLTHAQVYEILKDVDPSFLKGSLGKKNKIFLQSFPLTPNCHRVAEFGQNL
TFDERTRAYRRLIGFRGTANELSACVLDCIKLSKIRAEKPTIRDPDLTDDNPGKMHALKY
IKEVSLGKRTDFCFRLVCVGDPYIRLDEIGIPRDIAETMLVSEQLNSLNWEKINDSCGLR
ILQRGETFIRRRGGLVPVRYGDRLRIGDTVYRPLHDGDIVLINRPPSIHPHSLIALRVKV
LPVKCVLSINPLICSPLRGDFDGDSLHGYIPQSLECRVELRELVTLENQLVDKQSGKNLL
SLSHDSLTAAHLMLENKVFFNRPQLQQLQMFCSHQHPELPAIVKKLKDSPTVMSSLWTGR
QLFSLILAKDFELSIEKTQIKKGEFVSLLNPSSCLQGGDDSIYGYLIKNFKGEEVLEFLH
SAQQLLIEWLSMRGFSVSLLDLYLTSDSQNNMNDEVLYGLCEAERQAQGQLLMVDAHQDF
LAGNFTENDGYNELESAKLCHDQQTSAALSRASAAAFKEAFRDLQNLIYNYATDENSFLS
MLKAGSKGSMLKFVQHSMCVGYQHSLVPLSFHFPRDFSCVSWNDHKRADSSFPSGVDKYI
PYGVIKSSFMSGLNPLEFFVHSVTTRDASFGGHADISGTLFRKLMFFMRDMYIAYDGTVR
NCYGNQLVQFSYDSKNAPVHTKSLLDKAECGAPVGSLAACAISEAAYGALDQPVSALENS
PLLNLKKVLECGVRKLRGNKTGSLFLSPKLKRWNNGFEYGAIDVKNHLEKLFLKDVVSLV
SIFYSPQTGKQSRSSPWICYFRIRKEAASRKQLKVQSIINTLKLKCADSTTSRKLKLSLP
KLQISSKNSPEDGTINETDENIFITVQIVDSSNNPLNTLQDVVVPFLLETVIKGSPNVKK
VDIVWKDGPKTSKSCKDSFGELYLRVFMSENCDRKNFWRLLTDDCIQIMDMIDWERSHPD
DIQDVISAQGIDAARNHFLRTLKSAIEDTGKDILPEHLALAADCLSATGEFVPINAKGLS
LQRKLASVSAPFSQACFANPSDCFLKAAKSEASDKLEGTIDALSWGKVPALGTGGRFDII
YSGKEHEIDKPEDVYSLLCKNIDTTEDKVDVKGTINKIPVPLPYPEFAADGISDLMKMVL
KKHISADDIKRLSKDLKYILYKYDVNKELSPDDNLVACKALCFHPRKKEKIGDGVYRIKV
GNNSQYGSTRCFIVEQVDGTTEDFSYHKCIHHALKLIAPKEAKLYETRWLNGKD
NT seq 4305 nt   +upstreamnt  +downstreamnt
atggacaatgaagtgtatgtagaccaacaagtgccatctggtgttcttacaagtataaag
ttcaaagttctatctgaggaagatgcagagaaggcatcggtgaaggaaattgctgttgcg
aatgaagttaccgaccctgcattgggattcccaaatcccgcatcacaatgtcatacatgt
ggtgccaaagattacagaacctgtgaaggtcacatgggtttaatcaaatttccttttaca
atacttcatccatacttcttacctgaagtggtacaaattctgaataaaatctgtcccgga
tgtaaaaacctcataaaagataaggccaagaaaggtggactgattcaagtcctgaaaatt
tgtaaatattgtgataaaagcttcagagacgattatccacctttgaagttcaaggtatca
acaaaggatgtctttggtaagtctgcaatcattgcagaaatccgaagctcaaaaaagcta
atttcagataaaagtttacctcatgattattgggatttcgttcccaatgatcctcaacaa
gaagaatcgttttcaacttttaatcgaagagttcttacacatgcacaggtgtatgaaata
ttgaaagatgttgatccaagctttcttaaaggatctttaggaaaaaagaacaagattttt
ctccaaagtttccctttgacacccaactgtcatcgtgtcgcagagtttggtcaaaacttg
actttcgatgagcgcactagggcatacagaagattgataggttttcgtggtacagcgaac
gagctgagtgcatgtgtactcgattgcataaaactttcaaagatacgagcagaaaagcct
acgattcgtgatcctgatttgactgatgataatcctggcaagatgcatgcattgaaatac
ataaaagaagttagtctgggaaaaagaactgatttttgtttcagactggtgtgtgttggt
gacccgtacataaggcttgacgaaattggtattccccgtgatatagccgaaacaatgctt
gtttccgaacaacttaattctttaaattgggaaaaaataaatgattcttgtggtttaaga
atccttcaacgtggagaaacttttattagacgcagaggcggtttagttcccgttagatac
ggagatcggttgcgtataggggacacggtatatcgacctcttcatgatggagacattgtt
ttaataaataggccaccatctattcatcctcattcactcattgctctccgggtcaaagtt
cttccggtcaagtgtgttctttccattaaccctcttatttgttcccctttaagaggcgat
tttgatggtgacagtcttcacggttacattcctcaatctttagaatgtcgggtcgagctt
agagagcttgttacattggaaaaccagttggttgataaacaaagtggcaagaatctgtta
tctttaagtcatgatagtttgaccgctgcccatttgatgctggaaaataaggtttttttc
aatcgcccgcaattgcaacagctccaaatgttttgttcacatcagcatcctgaattgccg
gctatagttaaaaagttaaaggattcaccaactgtgatgtctagtttatggactgggaga
cagttgtttagcctcattttggctaaagattttgaacttagcatagagaagactcagatt
aagaaaggggaatttgtgagtttgttaaatccgtcttcttgcttacaagggggtgatgat
agtatatacgggtatttgattaaaaattttaaaggtgaggaggttcttgaatttcttcat
tcggctcaacaattacttattgaatggctgtcaatgaggggatttagcgtgtcgttattg
gatctttacttgacttctgattcacaaaataatatgaatgatgaagttctttatgggtta
tgtgaagccgagaggcaagctcaagggcagctgttaatggtggatgctcatcaagatttt
ctggctggaaactttacagaaaatgatggttacaacgagttggagtctgcaaaactgtgt
catgatcagcaaacgtcggcggcattaagtcgagcatcagctgctgcgtttaaggaagcg
ttccgggatcttcaaaatcttatctacaattatgcgactgacgagaactcgtttttatct
atgttgaaggcagggagtaagggaagcatgttaaagtttgtccagcacagtatgtgtgtc
ggctatcaacattcgttagtcccactttcttttcactttcctcgtgatttttcttgcgtt
tcatggaatgatcataaaagagccgattcatcttttccttcgggtgtggataaatacatt
ccatatggtgttattaagagttcgtttatgtcgggcctgaatccgctggagttctttgtt
cattctgtgacaactagggatgcttcatttggtggccatgcggatatatcgggaacgttg
tttcggaaacttatgtttttcatgcgggatatgtacattgcatatgatgggactgtgaga
aattgttacggtaatcagcttgtacagttctcttatgattccaaaaatgctcctgttcat
acaaagtctcttttggataaggcggagtgtggggcccctgttggttctttggctgcatgt
gcaatttccgaggcagcttatggtgctttggatcagccagtcagtgcactggagaactcg
cccctgctaaacttgaagaaagttcttgaatgtggtgttagaaaactccgtggtaacaaa
actgggtcgctttttttgtctccaaaacttaaaagatggaataacggattcgaatatgga
gcaatagatgttaagaatcatttagagaagctattcttaaaagatgttgtgtcacttgtc
agcatattctattcaccacaaaccggcaaacaatctcgcagtagtccttggatttgctat
tttcgtatacgcaaggaagctgctagtagaaaacaactaaaagtgcagtcgattatcaat
actctgaagctcaagtgtgctgactctaccacttccaggaagttaaaactcagtctacca
aagttacagatatcatccaaaaattctcctgaagatggcactataaatgagacagatgag
aatatatttatcactgttcaaatagttgatagctcaaacaacccattgaatacactccaa
gatgttgtggtgccatttcttctggagacggttataaaaggatccccaaatgtcaagaaa
gtggatattgtatggaaagatggtccaaagacatcaaagtcttgcaaagattcttttggt
gaactttacttgcgtgttttcatgtcggaaaactgtgatagaaagaatttttggaggctc
ctaacggatgattgcatccaaataatggacatgattgattgggaacggagccatccagat
gacatccaagatgtgatttcggctcagggaatagatgcagctagaaaccattttcttcgt
acactgaaatcggcaatagaagatacaggtaaagacatacttccggaacatttggctctt
gctgccgactgtttatctgccacgggagagtttgttccaataaatgccaaagggctctcc
ctacagagaaaactagcatctgtttctgcacctttttctcaagcctgttttgctaatcca
tctgattgctttttgaaagctgctaaaagtgaggcttcagacaaactcgagggaactatc
gatgcattatcatggggaaaagttccagctcttgggactggtggaagatttgacattata
tattccgggaaggaacatgaaattgataaaccagaagatgtgtacagtctcttgtgtaaa
aatattgatactactgaagataaagttgatgtcaaaggcacaatcaataaaattccagtc
ccgttgccatatcctgagtttgctgcagacgggattagtgatttaatgaaaatggtgttg
aaaaagcatatatctgctgacgatatcaagcggttatcaaaagatttgaagtatatacta
tacaagtatgatgttaataaagagttaagcccagatgacaatcttgttgcatgtaaagct
ttatgttttcaccctcgaaagaaggagaagattggagacggagtttatagaataaaggtc
ggtaacaactcccagtatggaagtacacgttgcttcattgtggagcaagtagatggaaca
actgaagatttctcttatcataaatgcatacatcacgcgttgaaattgatcgctcctaaa
gaagcaaaactttacgagacgagatggttgaacggcaaagattga

DBGET integrated database retrieval system