KEGG   Erigeron canadensis (horseweed): 122593083
Entry
122593083         CDS       T07610                                 
Name
(RefSeq) ABC transporter I family member 19
  KO
K12608  CCR4-NOT complex subunit CAF16
Organism
ecad  Erigeron canadensis (horseweed)
Pathway
ecad03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122593083
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ecad03019]
    122593083
Messenger RNA biogenesis [BR:ecad03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     122593083
SSDB
Motif
Pfam: ABC_tran AAA_21 AAA_29 nSTAND3 ORC-CDC6-like SMC_N AAA_15 AAA_28 NACHT AAA_23 AAA_22 AAA AAA_30 AAA_24 SRP54 Zeta_toxin PduV-EutP AAA_18 Arf AAA_33 AAA_14 FtsK_SpoIIIE AAA_7 AAA_16 AAA_25 G-alpha
Other DBs
NCBI-GeneID: 122593083
NCBI-ProteinID: XP_043621364
LinkDB
Position
3:complement(38165991..38169006)
AA seq 288 aa
MESESSSSSIKVKGMQFGYSGDNPIFVDFNLKISPRSRCLLVGANGSGKTTLLKILAGKH
MVGGKDVVRVLDFSSFHDTHLVCSGDLSYLGGSWTKTIGSAGEVPLQGDFSAEHMIFGVE
GIDPVRREKLIELLDIDLQWRMHKVSDGQRRRVQICLGLLHPFQVLLLDEVTVDLDVVAR
MDLLEFFKEECEQRGSTIVYATHIFDGLESWATDLAYIQDGELKRYEKLAELPEMKNSSN
LLSVVESWLRSETKNPKKKPVNPSPLIPKTSPFDSSPFRSSRHMAFYR
NT seq 867 nt   +upstreamnt  +downstreamnt
atggaatccgaatcatcgtcaagcagtatcaaagtaaagggcatgcaattcggatacagt
ggcgataatccaatttttgttgattttaatctcaaaatatctcctcgatctcgttgcctt
cttgtcggcgctaacggatctgggaaaactactttgttgaagattttggctggaaaacat
atggttggtgggaaagacgttgtgcgggtgctagatttttcatcttttcatgacacacac
ttggtttgtagtggtgatttgtcctacctgggtggatcttggactaaaactattggttct
gctggagaagtaccactacaaggagacttctctgcagaacatatgatttttggagttgaa
gggattgatccagttagaagagagaagttgattgagttgctggacattgatctacaatgg
cggatgcataaagtgtctgatgggcaacgacgaagagtacagatctgcttgggcctcctt
catcctttccaggttctcttgttagatgaagtaacagtcgatctggatgttgttgctagg
atggatctactagagttctttaaagaagaatgtgaacagagagggtctacaatcgtatat
gcaacccacatttttgacggtctagagtcatgggcaacagatctggcttacatacaagac
ggagagttaaagaggtatgagaagttggcagagcttcccgaaatgaagaattcctccaat
ctgctatcagtggttgagtcctggcttcgttctgagacaaaaaatccaaaaaagaaacct
gtcaatccttcacccctcatcccaaagacctccccttttgattcttcccctttcagatca
tccaggcacatggctttctaccgatga

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