Erigeron canadensis (horseweed): 122602836
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Entry
122602836 CDS
T07610
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
122602836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122602836
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
122602836
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
122602836
NCBI-ProteinID:
XP_043631374
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Position
6:complement(25458286..25469014)
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AA seq
913 aa
AA seq
DB search
MGVPAFYRWLADRYPKSIVDVVEEELSGGGGVELLKANPNNVEFDNLYLDMNGIIHPCFH
PEGKPAPATYDDVFKSIFEYIDHLFSLVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKD
AAEAEAEEERLRVEFEAQGAALAPKEKLETSDSNVITPGTQFMSVLSVALQYFIQCRLNH
NPGWQFTKVILSDSNVPGEGEHKVMSFIRLQRNLPGFNPNTRHCLYGLDADLIMLSLATH
EVHFSILREVITMPGQQEKCFQCGQVGHLAAECRGDMNGKPLDDIPIHKKKYQFLNIWVL
REYLQYDLEIPNPPFEVSLERLVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLVQIYRK
EFAAMGGYLTDCGEVSLDRVEHFIQAVAIHEDQIFQKRARIHRAYENNEEYKRKARQEVD
EEPVAPVVDKIKLGEPGYKERYYNEKLNLSDPKEVEKVKRQMVLNYVEGLCWVCRYYYQG
VCSWQWYYPYHYAPFASDLKDLADLEITFFLGEPFKPFDQLMGTLPAASSNALPDNYRKL
MTDPSSPIINFYPFDFDIDMNGKRFSWQGVAKLPFIDEKRLLTETRKLEDTLTAEERARN
SVFFDLLYVSPRSSLAPQVYGYYNYFYHTHPSQRISWPVDVYASNGMNGFLWLSERNGWK
QVYQSPISGLEDIVDNHVLNITYINPSPHKHIPEPPRGVTMPKKILTSIDIKPLPILWHE
DNSGRRPQGSYNNRPQVPGAIHGNVLGEAAHRLLNNSLNIRSGGNSPGFYNQSQHRNGPN
NNLQHRPRPAGPSGYQRNYNEGSSYNNYPNPRGIIPRPKFGYSPNNFQANRQNSRQQESY
TYQDQYQDLNNGMAGLHMESGPRNKPYTVRMAQPQTAHNQNLRNFPTPPPYRPPIMVDRN
QQAKKVYQIKTRD
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccggcgttttacaggtggctggctgatcgttacccaaaatccattgttgac
gtggtggaggaagaactatccggcggtggcggtgtcgaattgttgaaagcgaatccaaat
aatgttgaatttgataatttgtatttggatatgaatggaattattcatccttgttttcat
ccagaaggaaagcctgctcctgctacatatgatgatgtatttaaatcgatctttgagtat
attgaccatctcttctcattggtgcggcccagaaaattactttatatggcgatagatggt
gtggctcctagagccaaaatgaatcaacaacggtcccggcgttttagggctgctaaagat
gccgctgaagctgaagccgaagaagagaggttaagagttgaatttgaagcccagggagcc
gcacttgctcctaaagagaaacttgaaacatctgattcgaacgttatcacacctggaact
caatttatgtccgtgctatctgtggccctccagtattttatacagtgtagattgaatcac
aatcctggatggcagtttacaaaggtgattctttctgactcaaatgtgcccggtgaaggg
gaacacaaagtgatgtcgtttattcggttacagcgtaatcttcccggcttcaatccgaat
actcgacactgtctttatggattggatgcagatcttattatgctgtctttagctactcat
gaggtccacttctcgatattgagggaggtgatcacaatgcctggtcagcaggagaaatgt
ttccaatgtggccaagtaggtcatctagctgctgagtgtcgtggtgatatgaatgggaag
cctttggatgatattccaattcataaaaagaaatatcagtttctcaacatttgggtgttg
cgagagtatttgcaatatgatttggagattccaaatcctccttttgaggtcagcctggaa
agactggtggatgattttgtatttctttgtttttttgtgggcaatgactttcttccccat
atgcctacattagagattcgagagggtgctataaatctgctagtgcaaatctatagaaag
gagtttgcagcaatgggtggttatcttaccgactgcggggaggtctcgctggacagagtt
gagcactttattcaggcagttgcaattcatgaagaccaaatctttcaaaagcgtgcccgc
atacatagggcgtatgagaacaatgaagaatataaacgtaaagcaagacaagaggttgat
gaggagcctgtggctcctgtggtggataagattaaattgggggaacctgggtacaaggaa
aggtattataacgagaagttaaatttgtcagatccaaaggaggttgaaaaagttaaaagg
caaatggtattgaattacgtggagggattatgctgggtctgtcggtattactatcagggt
gtttgctcttggcagtggtattatccgtatcattatgccccatttgcatctgatcttaaa
gatttagctgatctggaaataaccttttttttgggggagccatttaagccctttgatcag
cttatgggaactttgccagctgcaagttcaaatgctctgcccgacaattatagaaaactg
atgactgatccatcatcacccataatcaacttctacccttttgattttgacatcgacatg
aatggaaagcgtttttcatggcagggtgtagccaaattgccatttattgatgagaagagg
ctacttactgaaacaagaaagcttgaggacactttaacagctgaagagcgagctcgaaat
agtgttttctttgatttattgtacgtatctccacgtagtagcttggccccacaagtttat
gggtattataattatttttatcatacacacccaagtcaaaggatctcctggccagttgat
gtatacgctagtaatggaatgaatggttttctgtggttgtctgagagaaatggttggaaa
caagtatatcagtcccctatcagtggtttggaggatattgtggataaccatgtgctgaac
attacttatatcaatccatcaccccataaacatattccagaacctccaagaggagtaact
atgccaaagaagattttgacatctattgatatcaaacctctgcctattttatggcatgaa
gacaatagtgggcgtcgccctcaagggagttacaataataggcctcaagtaccgggggca
atacatggaaatgtgttgggagaagctgctcaccgtctcttaaacaactcactaaatatc
agatctggtggtaattctcccggattctataaccaatcacagcacagaaatggtccaaac
aacaatctgcaacataggcccagaccagctggaccatcaggttaccaaaggaattacaac
gagggttcaagttacaacaattatcctaatcctagggggataattcctaggcctaagttc
ggatactctcctaataactttcaagcgaatagacagaattcaagacagcaagaaagttat
acataccaagaccagtaccaagatctgaataatggcatggctggtttacatatggaaagt
gggcctagaaacaaaccatatacagttaggatggcgcaaccacagaccgcacataatcag
aaccttcgtaactttccaactccgcctccctataggccccccataatggtagatagaaat
caacaagcaaagaaggtttatcaaatcaagactcgggattga
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