Enterobacter cancerogenus: CWI88_06320
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Entry
CWI88_06320 CDS
T05545
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ecan
Enterobacter cancerogenus
Pathway
ecan03030
DNA replication
ecan03410
Base excision repair
ecan03420
Nucleotide excision repair
ecan03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CWI88_06320 (ligA)
03410 Base excision repair
CWI88_06320 (ligA)
03420 Nucleotide excision repair
CWI88_06320 (ligA)
03430 Mismatch repair
CWI88_06320 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecan03032
]
CWI88_06320 (ligA)
03400 DNA repair and recombination proteins [BR:
ecan03400
]
CWI88_06320 (ligA)
Enzymes [BR:
ecan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CWI88_06320 (ligA)
DNA replication proteins [BR:
ecan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CWI88_06320 (ligA)
DNA repair and recombination proteins [BR:
ecan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CWI88_06320 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CWI88_06320 (ligA)
MMR (mismatch excision repair)
DNA ligase
CWI88_06320 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CWI88_06320 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_ligase
DUF2229
Motif
Other DBs
NCBI-ProteinID:
AUJ80683
LinkDB
All DBs
Position
1335703..1337718
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDALSWCCELKLDGLA
VSILYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIARLGLRIGDKVVIRRAGDVIPQVVNVVESERPDDTRAIEFPSHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLDRMGPKSAQNVVNALETAKKTTFARFLYALGIREVGEATAAGLAAYFGTLEALEK
ASIDELQKVPDVGIVVATHVFNFFAEESNREVIGKLLAEGISWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMLRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaactcactgaactgcgaaccacgcttcgccatcatgaatat
ctctatcacgttatggacgcgccggaagtgccggatgcggagtatgaccgcctgatgcgt
gagctgcgtgaattagaagcgcagcatcccgagctcattaccccggactccccaacgcag
cgcgtcggtgcagagccgctgggtgcattcagtcaggtgcgtcatgaagtgcctatgctg
tcgctggataacgtctttgatgaagagagttttctggcattcaacaagcgcgtgcaggat
cggcttaaaagcagcgatgcgctgagctggtgctgcgagctgaagctggacggcctggcc
gtcagcattctgtatgaaaacggcgtactggtgcgcgcggcgacccgcggcgacggcacc
acgggtgaggatatcaccacgaacgttcgcactattcgcgccatcccgctgaagctgcac
ggcgataacattcctgcgcgtcttgaagtgcgcggggaagtgttcctgccacaggcgggc
tttgaaaagattaacgaagaggcgcgtcggaccggcggcaaagtatttgctaacccgcgt
aatgcggcggcgggctccttacgccagcttgatccccgtatcaccgcgaagcgaccgctg
acgttcttctgctacggcgtgggtattctggagggcggtgaactgcctgatacgcatctg
ggccgtttgctgcagtttaaggcctgggggctgccggtaagcaaccgcgtgcagctctgt
gattctcctgaggccgtgctggcgttctaccacaaggtggaagaagatcgtccgaccctg
ggctttgacatcgacggcgtggtgattaaggtcaactcgctggcgttacaggagcagtta
ggctttgtcgcacgcgcgccgcgttgggcggtggcctttaaattcccggcgcaggagcag
atgacctttgttcgcgacgtggagtttcaggtcgggcgcaccggggcgatcacgccggtg
gcgcgtcttgagccggtgcaggtggctggcgtgctcgtcagcaatgcgacgctgcacaat
gccgatgaaattgcgcgcctggggctgcgcattggcgacaaggtggtgattcgccgtgcg
ggtgatgtgatcccgcaggtggtgaacgtcgtggagtcagaacgcccggacgatacccgt
gcaattgagttcccgtcacattgtccggtatgcggttcggacgttgaacgcgttgaaggt
gaggccgtaacgcgctgcaccggcggtttgatctgcggggcccagcgcaaagagtcgctg
aagcacttcgtttcacgccgcgccatggacgtcgacggcatgggcgacaaaatcatcgat
cagttggtggaaaaagagtatgtccatacgccagccgatctgtttaagctgacggcgggt
aaactgaccggtcttgatcgcatggggccaaagtcggcgcaaaatgtggtgaacgccctg
gaaaccgccaaaaagacgacctttgcccgtttcctttatgcgttgggtattcgtgaagtg
ggcgaagctacggccgctggtctggccgcgtatttcggtaccctggaggcgctggagaaa
gccagtatcgacgaactgcaaaaagtcccggacgttggaattgtggtcgcgacgcatgtc
tttaacttctttgctgaagagagcaaccgcgaggttatcggcaagctgctggctgagggg
atcagctggcctgcgccggttgtggtgaatgccgaggaaatagacagcccgttcgccggt
aaaacggtggtcctgacagggagcctgagccagctttcacgtgatgatgctaaagcgcgt
ctggtggcgttgggcgcaaaagtggcgggcagcgtatcgaagaaaaccgacctggtgatc
gccggggaagccgccggttcgaagcttgccaaagcgcaggagctgggcattgaggttatc
gacgaggcggaaatgctgcgcctgctgggggaataa
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