Equus caballus (horse): 100062029
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Entry
100062029 CDS
T01058
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ecb
Equus caballus (horse)
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecb03036
]
100062029 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
ecb03400
]
100062029 (SMCHD1)
Chromosome and associated proteins [BR:
ecb03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
100062029 (SMCHD1)
DNA repair and recombination proteins [BR:
ecb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
100062029 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_5th
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_2nd
Ig_SMCHD1_6th
Ig_SMCHD1_7th
Ig_SMCHD1_4th
SMC_hinge
HATPase_c_3
HATPase_c
IFT20
DUF4763
Motif
Other DBs
NCBI-GeneID:
100062029
NCBI-ProteinID:
XP_023503317
UniProt:
A0A3Q2H025
LinkDB
All DBs
Position
8:46034543..46171292
Genome browser
AA seq
1998 aa
AA seq
DB search
MAAAGGGGPSVGTGEGGGGDGYRTVYLFDRREKESELGDRVLKVGEGSDYAGFRASVCQT
LGISPEEKFVITTTSRKEVTCDNFDETVKDGVTLYLLQSVNQLLQTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRRIQIKLHFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIQNRKPSDSVHITNDDE
RFLHHLISEENEKDSFTAVVITGVQPEHIQYLKNYFPLWTRQLAHIYHYYIHGPKGNEKR
TSKEVGPFNNIDIEISMFEKGKAPKIVNLREIQDDMQTLYINTAADSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDETRT
VPIAKLDRTVAEKTVKKYVEDEMARLPDRLSVTWPEGDELLPNEVRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDPPFRVGVPFNI
PLEFQDEFGHTSQLINDIQPVLEASGLSLHYEEITKGPNCVIRGVTAKGPVNSCQGKNFN
LKVILPGLKEDSQILKIRLLPGPPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNVTAQ
PKLIVHCKFLGAPNLPVYVVDCSSSGTSILSGSAIQVQNIKKDQTLKAKIEIPSCKDVAP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGEREIHI
TSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVIIVTDQYGNQIQAFSPSSLSALGIAGIGLDS
SRLKTTFQENTQSISVRGVKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWP
ELKESIPVINGRELQHPLIVQLCDQWDNPAPVPQVKISLIKANYLKLTPSNQQHKTDERG
KANLGVFSVYAPRGEHTIQIKAVYNKTTIEGPIIKLMILPDPEKPIRLNVKYDKDASFLA
GGVFTDFMITVISEDDSIIKNINPARITMKMWKLSNSGSRPPANAETFSCNKIKDNDKED
GCFYFRDKAIPNKVGTYCIQFGFMMDKANILNSEQVIVDVLPNQPVKLVPEIQPATPAVS
NVRSVASRTLVKDLHLNITDDYNNYTGIDLVGTVIATIKGSNEEDNDTPLFIGKVRTLEF
PFVKGSAEITSLVLAENSPGRDSTEYFIIFEPRLPALSRKLESYILPFMFYNDVKKQQQM
AELTKEKDQLSKSIIMYRSLFEASKQLLDEMKCQVEEAKLKEAQLRNELKAHNIDIPTTQ
QMPHIEALLKRKTSEQEELRKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVISW
HLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKP
VGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRD
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCLILGEQIDLLQQYRTAVCKLGAVN
DDLNGQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCSDSLRHPMADCPIPPK
RMRRDTTRQNRIITKTDV
NT seq
5997 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcggcgggccctcggtggggactggagagggcggcggcggcgac
ggctacaggacagtgtacttgtttgaccggcgcgagaaggagtccgagctcggggaccgg
gtgctgaaggtcggggagggctcggactacgcggggttccgcgcctccgtgtgtcagaca
cttggcatttcacctgaagagaaatttgttattacaacaacaagtaggaaagaagttacc
tgtgataattttgatgagactgttaaagatggagtcactctatacctgctacagtcagtc
aatcagttactacaaacagctacaaaagaacgaattgacttcctacctcactatgacaca
ctggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttaccattt
gctcttgcagaattgattgacaattcattgtctgctacttctcgtaacactggtattaga
agaatacagatcaaattgcattttgatgaaacacaaggaaaacctgccgttgcagtgata
gataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtataggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcgggatatgttcgaccagtacca
gtgccacgcagtttaaacagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacagtcagccagaatgataagcaaacctgcagattcccaagatgttcat
gagcttgtgctttctaaagaagattttgagaagaaggagaaaaacaaagaggcaatatat
agtggatatattcaaaacagaaagccatctgattctgttcacattacaaatgatgatgaa
agatttctacatcatcttatctcagaggagaacgaaaaagatagctttactgctgtggtt
atcacaggagtacaaccagaacacatacaatacttgaaaaattatttccctctttggaca
agacagttagcgcatatttatcattactatattcatggtccaaaaggaaatgaaaaacgt
acatcaaaagaagttggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaaggcacctaagattgtcaacctaagggaaatacaagatgacatgcagacgttgtat
ataaacacagcagctgatagctttgagttcaaggctcatgttgaaggagacggtgtagtg
gaagggattatccgatatcaccctttcttatatgatagagaaacttaccctgatgatcca
tgctttccatcaaaattaaaagatgaagatgatgatgatgattgtttcatacttgagaaa
gcagcaagagggaaaaggcctatttttgaatgtttttggaatggacgactaataccatat
acttctgttgaagactttgactggtgtactcctcctaagaagagagggcttgcaccaatt
gagtgctacaatagaatatctggtgcattattcactaatgacaaattccaggtcagcaca
aataaattgacttttatggatcttgagctaaaactgaaagataagaacaccctttttaca
aggattttaaatggacaggagcagcgaatgaaaattgacagagaatttgctctatggctg
aaggactgtcatgaaaagtatgacaaacaaataaaatttacactttttaaaggaataatt
acacgtcctgatcttccttctaaaaagcagggcccctgggcgacatactcagcaatagaa
tgggatggaaaaatatacaaagcaggacagctggtcaagacaatcaagacactgcctctc
ttttatggaagcatagtaaaattttttctttatggtgatcatgatggagaagtatatgct
acaggaggagaggttcaaattgcaatggaacctcaggcactgtatgatgaaacaagaact
gtgccaattgcaaaactggataggacggttgctgagaagactgtaaaaaaatacgtggaa
gatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaaggagatgaatta
ttgccaaatgaggttaggcctgctggaacacccattggtgcattaagaattgaaatactg
aataaaaaaggggaagcaatgcagaagcttccaggaacaagtcatggagggtcaaagaaa
ctcttggttgagctcaaagttatattacactcttcaagtggaaataaagaaataatttca
catattagtcagcatggaggaaaatggccttactggtttaaaaaaatggaaaatattcaa
aagttggggaattatacactgaaattacaagttgtattgaatgaaagtaatgcagacact
tatgcaggaagaccattaccatctaaagcaattaaattttctgttaaagagggtaagcca
gagaaattttcatttggtcttctggatcctccttttcgtgttggagtcccattcaatatt
cctctggagtttcaagatgaatttggtcatactagtcaactaataaatgatattcagcca
gttcttgaagcaagtggtttatctttacattatgaagaaataaccaaaggaccgaattgt
gtaatccgaggtgttacagctaagggccctgtaaactcttgtcaaggcaagaattttaat
ctgaaggttattctgccgggtttaaaagaagactcacagattttgaaaattagattacta
ccaggtccccctcgtcgattgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccatttcaggtagaagttttggatgaatcagacaatgtaacagcacaa
ccaaaactgattgttcattgtaagtttttaggtgctccaaaccttccagtttatgttgtg
gattgcagtagttctggaaccagtattttatcaggatctgcaattcaagttcagaatatt
aaaaaagaccagacgcttaaggctaaaattgaaatacctagttgtaaagatgtagcccct
gtggagaagactattaagttgcttcccagtagccatgttgcaagattacagattttcagt
gtggaaggacaaaaggcaatccagataaaacatcaggatgaggtcaattggatagcaggc
gatattatgcacaaccttatttttcaaatgtatgatgaaggagaaagagaaatccatata
acatcagctttagcagagaaaattaaagttaattggactcctgagattaacaaagaacac
ttgctgcagggtctgcttcctgatgtacaagtaccaacgtctgtaaaagatatgcgttat
tgccaggtttcattccaagatgatcatgtgtctttggaaagtgcatttacagtaagacca
cttcctgatgaacctaaacatctaaaatgtgagttgaaaggaggaaaaacagtacagatg
ggccaagagcttcaaggagaaatagttataatagttacagatcaatatggaaatcagatt
caagcattttcaccaagttctttatctgccttgggaattgctgggattggacttgatagc
tcacgtttgaaaactacttttcaggaaaatacacaaagtataagtgtaagaggcgtcaaa
tttattccaggtcctcctggaaataaggatctttgttttacttggcgtgagttttctgac
tttattcgagtgcagctaatttctggaccaccagctaaacttctcctcatagactggcca
gaattaaaggagtccattccggtgattaatggaagagaattacagcatcctctcattgtt
caactttgtgatcagtgggataatccagcacccgtaccacaagttaaaataagtctcata
aaagctaactacttaaaactcaccccttcaaaccaacagcataaaacagatgaaaggggc
aaggctaatttgggagtgttcagtgtttatgcccctagaggagagcatactattcagatt
aaagccgtctataacaagactaccatagaaggacctataattaagttaatgattcttcca
gaccctgaaaaacccattcgtctcaatgttaaatatgacaaagatgcttcctttttagca
ggaggtgttttcactgattttatgattactgttatttctgaagatgacagtatcattaaa
aatattaatccagcacgtattactatgaaaatgtggaagctgtctaacagtgggagccga
ccaccagcaaatgcagaaacattcagttgtaataaaataaaagataatgacaaggaagat
ggctgcttctacttcagggataaagcaattcctaacaaagtggggacatattgtatccag
tttggttttatgatggataaagcaaatattcttaacagtgaacaggttatagttgatgtt
ctgcctaatcaacctgtgaagttagttccggaaattcagccagctacaccagctgtttca
aatgttcgctcagttgccagtaggaccttagtcaaagatttacatcttaatatcacggat
gactacaacaattataccggaattgatttggttggcactgtaatagctaccatcaaaggt
tctaatgaggaagataatgatacacctctctttattggaaaagttagaacacttgaattt
ccctttgtgaaaggttcagctgaaatcacgagcctagtgctggcagaaaatagtcctgga
agggatagtaccgaatattttattatatttgagcctcggctaccagctttatcaagaaaa
ttagaatcatatatcctaccgtttatgttttacaatgatgttaagaagcagcaacaaatg
gcagaacttactaaagaaaaggaccaattatctaaatctattataatgtatagaagttta
tttgaagccagcaaacagcttcttgatgaaatgaagtgccaagttgaagaagcaaaatta
aaagaggcccagttgagaaatgaactaaaagcacataatattgacattcctacaacacaa
cagatgccacacattgaagcgcttttgaaaagaaagacatcagaacaggaagaactaagg
aaaaaacctagaagatcatgtactcttccaaactacactaaaggcagtggagatgttttg
ggaaagattgcacacctggcacaaattgaagatgatagagctgccatggttatttcttgg
catctagcaagtgacatggactgtgtggtcaccctgaccactgatgctgcacgtcgtatc
tatgatgaaacacaaggtcgtcagcaggtgttgccccttgattctatttataagaagact
cttccagattggaaaagacctctacctcattaccgaaatggaaaattatattttaaaccc
gttggagatccagtctttgcccgagatttgttaacatttccagataacgtagaacattgt
gaaacagtatttggtatgctgttaggagacaccattattttggataatttggatgctgcc
aatcattatagaaaagaggttgttaaaattacacactgtcctacactgctgaccagagat
ggagatcgcattcgaagtaatggaaagtttggcggccttcaaaataaagctcctccaatg
gataaacttcggggaatggtatttggagctccaatcccaaaacagtgcctgatcttaggg
gaacaaatagatcttcttcagcagtatcgtactgctgtgtgcaagttgggtgctgtgaat
gatgaccttaatggtcagttagagtaccttcacacgcctgatatgaagaagaaaaaacaa
gaactcgatgaacaagagaaaaacctgaaactaatagagcaaaaactaggtatgactccc
acacgtaagtgtagtgattcattgcgtcatccaatggctgattgtccaattcctcctaaa
agaatgagaagagacactacaagacaaaataggattataaccaaaacagatgtgtga
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integrated database retrieval system
