Escherichia coli O6 K2 H1 CFT073 (UPEC): c2945
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Entry
c2945 CDS
T00106
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ecc
Escherichia coli O6:K2:H1 CFT073 (UPEC)
Pathway
ecc03030
DNA replication
ecc03410
Base excision repair
ecc03420
Nucleotide excision repair
ecc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
c2945 (lig)
03410 Base excision repair
c2945 (lig)
03420 Nucleotide excision repair
c2945 (lig)
03430 Mismatch repair
c2945 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecc03032
]
c2945 (lig)
03400 DNA repair and recombination proteins [BR:
ecc03400
]
c2945 (lig)
Enzymes [BR:
ecc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
c2945 (lig)
DNA replication proteins [BR:
ecc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
c2945 (lig)
DNA repair and recombination proteins [BR:
ecc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
c2945 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
c2945 (lig)
MMR (mismatch excision repair)
DNA ligase
c2945 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
c2945 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
RNA_ligase
Prok-E2_C
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AAN81395
UniProt:
Q8FFC1
LinkDB
All DBs
Position
complement(2809040..2811055)
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQ
RVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG
FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEA
ASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DETEMLRLLGS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactgacagaactgcgaacgacgcttcgccatcatgaatat
ctttatcatgtgatggatgcgccggaaattcccgacgctgaatacgacaggctgatgcgc
gaactgcgcgagctggaaaccaaacatccagaactgattacgcctgattcgcctacccaa
cgtgtaggtgcagcgccgctggcggctttcagccagatccgccatgaagtgccaatgctg
tcgctggataacgtttttgatgaagaaagctttcttgctttcaacaaacgtgtgcaggac
cgtctgaaaagcaacgagaaagtcacctggtgctgtgagctgaagctggatggtcttgcc
gtcagtattctgtatgaaaatggcgttttagtcagtgccgcgacgcgtggcgatggcacc
accggggaagatattacgtctaatgtgcgtactattcgcgccattccgctgaagctacac
ggagagaatatcccggcgcgtctggaagtgcgtggtgaagtgttcctgccgcaggcgggg
ttcgaaaagattaacgaagatgcgcgacgcacgggcgggaaagtgtttgctaacccacgt
aatgcggcagctggttcactgcgtcagcttgatccgcgtattacagcgaagcgaccgctc
actttcttctgctacggcgtcggtgttctggaaggtggcgagctgccggatactcatctt
ggccgtttactgcaatttaaaaagtggggtttgccggtcagcgatcgggtaacgctttgt
gaatcggcggaagaagtgctggcgttctaccacaaagtagaagaagaccgtccgacgctg
ggctttgatatcgacggcgtggtgattaaggtcaactcactggcacagcaggagcagctt
ggctttgtcgcgcgtgccccgcgctgggcggtagcgtttaaattcccggcgcaggaacag
atgacctttgtgcgtgacgtcgagtttcaggttgggcgtactggcgcgattacgcctgtt
gcgcgtctggaacctgtccatgttgctggcgtgttggtgagtaacgctacactgcataat
gctgacgaaatcgaacgtcttggtttacgcattggcgataaagtggtgattcgccgcgca
ggcgatgtgatcccgcaggtggttaacgtcgtgctttctgaacgcccggaagatacccgt
gaggttgtattcccgacgcattgtccggtatgtggttctgacgtcgagcgtgtggaaggt
gaagcggttgcccgctgtaccggtggcctgatttgcggtgcgcagcgtaaagagtctctg
aaacactttgtttcccgccgtgcgatggatgttgacggaatgggcgacaaaatcatcgat
caactggttgaaaaagaatatgtccacactccggcggatctgttcaaactcaccgcaggc
aaactgaccggactggagcgtatggggccgaaatcggcacaaaacgtggttaacgcgctg
gaaaaagcgaaagaaaccacctttgcccgcttcctctatgcacttggcatccgtgaagtc
ggcgaggctaccgcagcaggtctggcggcatatttcggcacgctggaagcgctggaagcc
gcgtcgattgaagagctgcaaaaggtgcctgatgttggaattgtcgttgcctcccacgtt
cacaacttctttgccgaagaaagcaaccgcaatgtcatcagcgagctgttggcggaaggt
gttcactggcctgagccgatcgttatcaatgcggaagagattgacagtccgtttgctggt
aaaaccgtggtgcttacgggcagcttaagccagatgtcgcgtgatgacgctaaagctcga
ctggtcgaactgggggcgaaagtcgcgggcagcgtgtcgaagaaaaccgatctggtgata
gcgggtgaagctgcaggatctaaactggcgaaggcgcaggaactgggcattgaagtcatc
gacgaaacggaaatgctgcgtttgctgggtagctga
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integrated database retrieval system
