Escherichia coli O157 H7 EDL933 (EHEC): Z3677
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Entry
Z3677 CDS
T00044
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ece
Escherichia coli O157:H7 EDL933 (EHEC)
Pathway
ece03030
DNA replication
ece03410
Base excision repair
ece03420
Nucleotide excision repair
ece03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ece00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Z3677 (lig)
03410 Base excision repair
Z3677 (lig)
03420 Nucleotide excision repair
Z3677 (lig)
03430 Mismatch repair
Z3677 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ece03032
]
Z3677 (lig)
03400 DNA repair and recombination proteins [BR:
ece03400
]
Z3677 (lig)
Enzymes [BR:
ece01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Z3677 (lig)
DNA replication proteins [BR:
ece03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Z3677 (lig)
DNA repair and recombination proteins [BR:
ece03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Z3677 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Z3677 (lig)
MMR (mismatch excision repair)
DNA ligase
Z3677 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Z3677 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
Zn_ribbon_NUD
RNA_ligase
Prok-E2_C
Motif
Other DBs
NCBI-ProteinID:
AAG57530
UniProt:
Q8XBL5
LinkDB
All DBs
Position
complement(3322386..3324401)
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQ
RVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG
FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLLQFKKWGLPVSDRVTLCESAEEVLAFYXXXEEDRPTLGFDIDGVVIKVNSLEQQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTYCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEA
ASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWXAPIVINAEEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMLRLLGS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactgacagaactgcgaacgacgcttcgccatcatgaatat
ctttatcatgtgatggatgcgccggaaattcccgacgctgaatacgacaggctgatgcgc
gaactgcgcgagctggaaaccaaacatccagaactgattacgcctgattcgcctacccaa
cgtgtaggtgctgcgccgctggcggctttcagccagattcgccatgaagtgccaatgctg
tcgctggataacgtttttgatgaagaaagctttcttgccttcaacaaacgtgtgcaggac
cgtctgaaaagcaacgagaaagtcacctggtgctgtgagctgaagctggatggccttgcc
gtcagtattctgtatgaaaatggcgttttagtcagtgccgcgactcgtggcgatggcacc
accggggaagatatcacgtctaatgtgcgtactattcgcgccattccactgaagttgcac
ggagagaatatcccggcgcgtctggaagtgcgtggtgaagtgttcctgccgcaggcgggg
ttcgaaaagattaacgaagatgcgcgacgcacgggcgggaaagtgtttgctaacccacgt
aatgcggcagctggttcactgcgtcagcttgatccgcgtattacagcgaagcgaccgctc
acttttttctgctatggcgttggtgttctggaaggtggcgagctgccggatactcatctt
ggccgtttactgcaatttaaaaagtgggggttgccggtcagcgatcgggtaacgctttgt
gaatcggcggaagaagtgctggcgttctatcmcrawgwggaagaagaccgcccgacgctg
ggctttgatatcgacggcgtggtgattaaggtcaactcactggaacagcaggagcagctt
ggctttgtcgcgcgagccccgcgctgggcggtagcgtttaaattcccggcgcaggaacag
atgacctttgtgcgtgacgtcgagtttcaggttgggcgtactggcgcgattacgcctgtt
gcgcgtctggaacctgtccatgttgcaggcgtgctggtgagtaacgcaaccttacacaat
gcggatgaaatcgaacgtcttggtttacgcattggcgataaagtggtgattcgccgcgct
ggcgacgtgatcccgcaggtggttaacgtcgtgctttctgaacgcccggaagatacccgt
gaggttgtattcccgacgtattgtccggtatgtggttctgacgttgagcgtgtggaaggt
gaagcggttgcccgctgtactggtggtctgatttgcggtgcgcagcgtaaagagtcgctg
aaacactttgtttcccgccgtgcgatggatgttgacggaatgggcgacaaaatcatcgat
cagctggttgaaaaagaatatgtccacactccggcggatctgttcaaactcaccgcaggc
aaactgaccggactggagcgtatggggccaaaatcggcacaaaacgtggttaacgcgctg
gaaaaagcgaaagaaaccacctttgctcgcttcctctatgcacttggcatccgtgaagtc
ggcgaggccaccgcagcaggtctggcggcatatttcggaacgctggaagcgctggaagcc
gcttcgattgaagagctgcaaaaggtgcctgatgttggcattgtcgttgcatcccacgtt
cacaacttctttgccgaagaaagcaaccgcaatgtcatcagcgagctgttggcggaaggt
gttcactggcmtgcgccgatcgttatcaacgcggaagagattgacagcccgtttgctggt
aaaaccgtggtgcttacgggcagcttaagccagatgtcgcgtgatgacgctaaagctcga
ctggtcgaactgggcgcgaaagtcgcgggcagcgtgtcgaagaaaaccgatctggtgata
gcgggtgaagctgcaggatctaaactggcgaaggcgcaggaactgggcattgaagtcatc
gacgaagcggaaatgctgcgtttgctgggtagctga
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integrated database retrieval system
