Escherichia coli O157 H7 EDL933 (EHEC): Z5073
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Entry
Z5073 CDS
T00044
Symbol
yicF
Name
(GenBank) putative enzyme
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ece
Escherichia coli O157:H7 EDL933 (EHEC)
Pathway
ece03030
DNA replication
ece03410
Base excision repair
ece03420
Nucleotide excision repair
ece03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ece00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Z5073 (yicF)
03410 Base excision repair
Z5073 (yicF)
03420 Nucleotide excision repair
Z5073 (yicF)
03430 Mismatch repair
Z5073 (yicF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ece03032
]
Z5073 (yicF)
03400 DNA repair and recombination proteins [BR:
ece03400
]
Z5073 (yicF)
Enzymes [BR:
ece01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Z5073 (yicF)
DNA replication proteins [BR:
ece03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Z5073 (yicF)
DNA repair and recombination proteins [BR:
ece03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Z5073 (yicF)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Z5073 (yicF)
MMR (mismatch excision repair)
DNA ligase
Z5073 (yicF)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Z5073 (yicF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AAG58791
UniProt:
Q8XD89
LinkDB
All DBs
Position
complement(4632333..4634021)
Genome browser
AA seq
562 aa
AA seq
DB search
MKMKVWMAILISILCWQSSVWAVCPAWSPARAQEEIFRLQQQIKQWDDDYWKEGKSEVED
GVYDQLSARLTQWQRCFVSEPRDVMMPPLNGAVMHPVAHTGVRKMADKNALSLWMRERSD
LWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANSTLQ
GEIFLQREGHIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMTDRLKE
LATAGFTLTQRYTRAVKNADEVARVRNEWWKAKLPFVTDGVVVRXAKEPESRHWLPGQAE
WLVAWKYQPVAQVAKVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWD
IAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLV
WLGSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHRFN
LARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWK
ENAQIKKLGSWLAAQQITGFEP
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
gtgaagatgaaagtatggatggcgatattaataagtatcttgtgctggcaatcatctgtg
tgggcggtctgtccggcctggtcgccagccagagcacaggaagaaattttccgcctgcaa
cagcaaataaaacagtgggacgatgactactggaaggaaggaaaaagtgaggtggaagac
ggtgtttacgatcagttaagcgcccgtcttacgcagtggcaacgctgctttgtgagcgag
ccccgcgacgtgatgatgccgcctttaaatggtgcggttatgcatccggttgcccatacg
ggtgtacgcaaaatggcggataaaaacgcattaagtctgtggatgcgagaacgtagcgat
ctttgggtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgggacgggaaa
ctgaacaaagcaatcagtcgcggtaatggcctgaaaggcgaggactggacgcagaaagtt
agcttaatttccgctgtgccgcaaaccgttagcgggcctttagccaacagtacgcttcag
ggggaaatatttctccagcgcgaggggcatatccaacaacaaatggggggaataaatgcc
cgcgcaaaagttgctggcctgatgatgcgccaggacgatagcgacacgctgaattctctg
ggcgtttttgtctgggcatggccggatggaccgcagttaatgaccgatcgtttaaaggag
ctggctaccgcaggttttactctaacgcagaggtatacccgtgcggttaaaaatgctgat
gaggttgcgcgcgtacgcaatgagtggtggaaagcgaaattacccttcgtcaccgatggc
gtggttgtgcgargggcgaaagaacccgaatcccgccattggctaccaggccaggcagaa
tggctggtggcctggaaatatcaacctgtagctcaggttgccaaagtgaaggcgattcag
tttgcggtgggtaagagcggtaaaatatcggtggttgcgtcactcgcacctgtcatgctg
gatgataaaaaagtccagcgggtgaatattggttccgtcaggcgctggcaggagtgggat
attgcgcctggtgatcagatcctcgtcagccttgccggtcagggtattcctcgcattgat
gatgtggtctggcgcggtgcagaacgtacaaaaccgacaccaccagaaaaccgctttaac
tcgttgacctgctactttgcttctgatgtttgtcaggaacagttcatttcacgcttagtc
tggctggggtcaaaacaggttctggggctggatggcattggtgaggccggctggcgcgcg
ctgcatcagactcatcgctttgagcatatcttttcctggcttttattaacgccagagcaa
ttacagaacacgccggggatcgcgaaaagtaaaagtgcgcagctatggcatcggtttaat
ctggctcgtaagcagccttttactcgctgggtgatggcaatgggaataccgctaacccgg
gcggcgcttaatgccagtgatgaacggtcctggtcgcaacttttatttagcacggagcag
ttctggcagcagctgccggggactggatcggggcgcgccagacaggttattgaatggaag
gaaaatgcgcaaatcaagaagctgggcagttggctggctgcccagcagatcacaggtttt
gaaccttag
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