Enterobacter chengduensis: FY206_00490
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Entry
FY206_00490 CDS
T06229
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
echg
Enterobacter chengduensis
Pathway
echg03030
DNA replication
echg03410
Base excision repair
echg03420
Nucleotide excision repair
echg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
echg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FY206_00490 (ligB)
03410 Base excision repair
FY206_00490 (ligB)
03420 Nucleotide excision repair
FY206_00490 (ligB)
03430 Mismatch repair
FY206_00490 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
echg03032
]
FY206_00490 (ligB)
03400 DNA repair and recombination proteins [BR:
echg03400
]
FY206_00490 (ligB)
Enzymes [BR:
echg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FY206_00490 (ligB)
DNA replication proteins [BR:
echg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FY206_00490 (ligB)
DNA repair and recombination proteins [BR:
echg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FY206_00490 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FY206_00490 (ligB)
MMR (mismatch excision repair)
DNA ligase
FY206_00490 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FY206_00490 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
DUF3701
Motif
Other DBs
NCBI-ProteinID:
QEL34007
LinkDB
All DBs
Position
103785..105461
Genome browser
AA seq
558 aa
AA seq
DB search
MWQWISGLVMLWCGYSAAVCPVWSQAKAEKEMASLSAQIKRWDEAYWKQGVSEINDEVYD
QLHGRLTQWQRCFGSEPLEEKLPSLAGSVKHPVAHTGVHKVASKEELRQWMGARQHLWLQ
PKVDGVAVTLVYRDGKLAQAISRGDGLKGEDWTGKVRLIPSIPQTLTGALANSVLQGELF
WLSDNHIQQQMGGMNARAKVAGAMMRQKDDALLSKISVFIWAWPDGPKDMRTSLAELSQA
GFTLSARYSLPAESVDVVEKQRETWHVTALPFATDGIVVRSEDEPAGEGWLPGEGHWVVA
WKYSPAAKVAEVSGIHFSVGRTGKISVVAALEPVQLDDKQVQRVSLGSVERWQRLDIAPG
DQIQISLAGQGIPRFDKVLWRGTDRHKPEPPATRYHALSCFYASPECMEQFFARLTWLSS
KQVFDIEGLGESGWRTLWQAHHFDHLFSWLLLTQEQLQATPGFSSARGLALWHRFNLVRE
KPFTRWLMALGVPLTQASLKAMGDVSWQTMIGRNVKDWQTLPGTGEEKARQIVNWMHAPQ
IDVLAKWLAAQHINGFGS
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtggcaatggattagcgggttagtaatgctgtggtgtggctatagcgcagcggtgtgt
ccggtgtggtcacaggcaaaagcagagaaagagatggcgtcgttaagtgcgcaaatcaag
cgctgggatgaggcttactggaagcagggcgtgagtgagatcaacgatgaggtctacgac
cagcttcacgggcggttaacgcagtggcagcgctgctttggcagtgagcctttagaggag
aaactcccctcgctggcgggaagcgtaaaacatcctgttgcccatacgggcgtacataaa
gtggccagcaaagaggagttgaggcagtggatgggtgcccgacagcacctgtggctgcag
cccaaagttgacggagtggcggtaacgctggtgtatcgtgacgggaagctagctcaggcc
atcagtcgcggtgatggcctgaaaggggaagactggaccggaaaggtgcgtttaatcccg
tctattccacaaacgctcaccggcgcgctggcgaacagcgtcttacagggcgagcttttt
tggttaagcgacaaccacattcagcaacagatgggcggaatgaacgcgcgcgcaaaggtg
gcgggagcgatgatgcggcaaaaggatgacgcgctattgagcaagatcagcgtattcatc
tgggcctggccggacggaccgaaagatatgcgaacttccttagctgaactgtctcaggcc
ggttttacgctctctgcacggtattcgcttcccgccgaatctgtagatgtcgttgagaaa
cagcgcgagacctggcacgtgaccgcattaccctttgccacggatggcattgtggtgcgt
tcggaggatgaacctgcgggcgaaggctggttaccgggagaaggtcactgggttgttgcg
tggaaatattctcctgcagccaaggttgctgaggtgagcggcattcatttttccgtgggg
cgaacgggtaaaatttccgttgtagcagcgctggaaccggtgcaactggatgataaacag
gtgcagcgggtgagtctgggctcggttgagcgctggcagaggctggatattgccccgggg
gatcaaatacagatcagcctcgccggtcagggtattccccggtttgataaggtgctctgg
cgcgggactgacaggcataagccggagccgccggccacgcgttatcatgcgcttagctgt
ttctatgcttcaccggaatgtatggagcagttctttgcccggctgacgtggctcagctca
aagcaggtattcgatatcgaaggattaggcgagtcagggtggcgaaccctctggcaggcg
catcattttgaccatctcttttcatggctgttattaactcaggaacagctgcaggctacg
ccgggtttttcctctgcgcgcgggctcgcgctctggcatcgatttaatctggtgcgcgag
aagccgtttacccgctggcttatggctttgggtgttccattgacccaggcttcgctgaag
gcgatgggagacgtatcgtggcagacgatgatcggacgtaacgtaaaggactggcagacc
ctgccgggaacgggcgaggagaaagcgcgacaaatcgttaactggatgcacgcacctcag
attgatgtgctggcgaaatggctcgctgcacagcacatcaacgggttcggaagctag
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