Enterobacter chengduensis: FY206_17785
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Entry
FY206_17785 CDS
T06229
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
echg
Enterobacter chengduensis
Pathway
echg03030
DNA replication
echg03410
Base excision repair
echg03420
Nucleotide excision repair
echg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
echg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FY206_17785 (ligA)
03410 Base excision repair
FY206_17785 (ligA)
03420 Nucleotide excision repair
FY206_17785 (ligA)
03430 Mismatch repair
FY206_17785 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
echg03032
]
FY206_17785 (ligA)
03400 DNA repair and recombination proteins [BR:
echg03400
]
FY206_17785 (ligA)
Enzymes [BR:
echg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FY206_17785 (ligA)
DNA replication proteins [BR:
echg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FY206_17785 (ligA)
DNA repair and recombination proteins [BR:
echg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FY206_17785 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FY206_17785 (ligA)
MMR (mismatch excision repair)
DNA ligase
FY206_17785 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FY206_17785 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
Prok-E2_C
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QEL37140
LinkDB
All DBs
Position
complement(3676735..3678750)
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELVTPDSPTQ
RVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDALTWCCELKLDGLA
VSLLYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLQGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLMQFKAWGLPVSNRVQLCDSPEAVLAFYHKVEADRPTLGFDIDGVVIKVNSLALQELL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVESERPDDTREVIFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEAAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEK
ASIDELQKVPDVGIVVATHVFNFFAEESNREVIGQLLEEGIKWPAPVAINADEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVAQGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVI
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactctatcgaacaacaactcactgaactgcgaaccacgcttcgccatcatgaatac
ctctatcatgttatggacgcgccggaagtcccggatgcggagtacgaccgcctgatgcgc
gagctgcgcgagctggaggcacagcatcctgaactcgttacgccggattccccgacccag
cgcgtcggcgccgagccgctgggggcgttcagtcaggtgcgtcatgaagtgccgatgctg
tcgctcgataacgtcttcgatgaagagagctttcttgcgtttaacaagcgcgtgcaggat
cgcctgaaaagcagcgacgccctcacctggtgctgcgagctgaagctggatggcctggcg
gtcagccttctctacgaaaacggcgtgctggtccgtgccgcgacgcgtggcgacggcaca
acgggggaagacatcaccaccaacgtgcgtaccatccgcgcgatcccgctgaagctgcag
ggggacaacattcctgcgcgtctggaagtgcgcggcgaggtattcctgccgcaggcgggc
ttcgagaaaatcaacgaagaagcgcgccgcaccggcggaaaagtgtttgctaacccgcgt
aacgcggcggcaggctctctgcgccagctcgatccgcgaatcaccgcaaagcgaccgctc
actttcttctgctacggcgttggcattctggagggcggcgagctgccggatacgcacctc
gggcgtctgatgcagtttaaggcgtggggcctgccggtgagcaaccgcgttcagctctgc
gactcgcctgaggcggtgctcgcgttctaccataaggtggaagcggatcgtccgacgctc
ggctttgatattgatggcgtcgttattaaggtgaactcgctggcgctgcaggagctgctg
ggctttgtggcgcgcgcgccgcgctgggcggtggcgttcaagttcccggctcaggagcag
atgaccttcgttcgcgacgtggagttccaggtcggtcgtacgggggccattactccggtc
gctcgcctggagccggtgcaggtggcgggcgtgctggtgagtaacgccacgctgcataac
gccgatgaaatcgagcgcctgggcctgcgtattggtgacaaagtggtcattcgccgcgcg
ggcgatgttatcccgcaggtggttaacgtcgtagagtcagaacgtcctgatgacacgcgt
gaagtgatcttcccgacccattgcccggtgtgcggctccgacgttgagcgcgttgagggc
gaggccgtggcgcggtgtacgggcggcttaatctgtggcgcgcagcgcaaagagtccctg
aagcactttgtctcccgtcgcgcgatggacgtcgacggcatgggcgataaaattatcgat
cagctggttgagaaagagtatgtccacaccccggcggatctcttccggctgacggcgggt
aagttgaccggcctggatcgcatggggccaaagtcagcccagaacgtggtgaacgcgctg
gaagccgccaaagaaaccaccttcgcccgcttcctgtacgcgctgggcattcgtgaagtg
ggggaagccacggcggcagggctggcggcctactttggcacgctggaggcgctggaaaaa
gcgagcatcgacgagctgcagaaagtcccggatgtcggcatcgtcgtcgccacgcacgtc
tttaacttctttgctgaggagagcaaccgcgaggtcatcggccaactgctggaagagggc
attaaatggcccgcgccggtggcgatcaacgccgatgagattgacagcccgttcgccggt
aaaacggtggtcctgaccggtagcctgagccagctttcgcgcgacgatgcgaaagctcgc
ctggtggcgcagggtgccaaagtggcgggcagcgtgtcgaagaaaaccgacctggtaatc
gccggagaagcggcgggctcgaagctggcgaaagcgcaggagctcggcattgcggtgatt
gacgaagcggaaatgatgcgcctgctaggagagtaa
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integrated database retrieval system
