Echinicola soli: FKX85_18575
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Entry
FKX85_18575 CDS
T06084
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
echi
Echinicola soli
Pathway
echi03030
DNA replication
echi03410
Base excision repair
echi03420
Nucleotide excision repair
echi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
echi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FKX85_18575 (ligA)
03410 Base excision repair
FKX85_18575 (ligA)
03420 Nucleotide excision repair
FKX85_18575 (ligA)
03430 Mismatch repair
FKX85_18575 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
echi03032
]
FKX85_18575 (ligA)
03400 DNA repair and recombination proteins [BR:
echi03400
]
FKX85_18575 (ligA)
Enzymes [BR:
echi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FKX85_18575 (ligA)
DNA replication proteins [BR:
echi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FKX85_18575 (ligA)
DNA repair and recombination proteins [BR:
echi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FKX85_18575 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FKX85_18575 (ligA)
MMR (mismatch excision repair)
DNA ligase
FKX85_18575 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FKX85_18575 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
Nlig-Ia
HHH
GT4-conflict
Auto_anti-p27
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QDH80941
UniProt:
A0A514CMA7
LinkDB
All DBs
Position
4761943..4764405
Genome browser
AA seq
820 aa
AA seq
DB search
MSTISKLEAQKRIAELTATLNHHNQLYYQEDRSEISDFEFDKLLEELIQLEAQFPALQDK
NSPTQHVGGAITKEFETVEHETRMLSLGNTYSKEELLAFDERVAKGLGHRGYSYFCELKF
DGVAISLVYENGELVRAVTRGDGYRGDNVTANVKTIKNIPLYLQGDDIPDKFEIRGEIFL
PIKEFEKINAAREANGEALLANPRNTASGTLKMQDSSIVAKRRLNCYFYQLLGDEIDVDQ
HDEAMHLLEKWGFNISPTYKNCTDINAVFEYIESWREKRHTLSLDTDGVVLKVNDYAQRE
ELGFTAKIPRWAIAYKYKAESAESELMSVTYQVGRTGAITPVANLSPVLLAGTTVKRASL
HNANEIKRLDLHNGDVVFVEKGGEIIPKITAVAVEKRKADAKPVSYITHCPECGTALERK
EGEAKHFCPNSASCPPQVLGRIEHFVHKRAMNIDSMGTERIRALINQGYVEHPADLYELN
HKKDQLLGLEINAEQYEKSSDGYLYVALRKALFAVTDGISLSAIYQYLEETETLEQHLKL
KQFTDFIHHQNKKVSLNLAAVDKLKNLLGQLAHDQIEDFLPVSAVMAMFVGNQLSLEALH
QLSLQKNTVHDIVLAFDFELHRDQEDKIKKLKGNTFQEGVISNMLSGIAASKEQPFEKVL
FALGIRNIGENTAQLLARHFKTIENLGQASTEQLLDINGVGETLVNSIREFFDQEENQAN
IQRLKAHGLHFEIKSEDLPEVKGNALEGLKVLASGKFEHFKRDEIIEAISAHGGTYLKSV
SKNLDLIIEGADMGPSKKEKAEKLGIKMISENEFLSMIAD
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccatttcaaaacttgaagcccaaaaaagaattgctgaactaacagctaccctc
aatcaccataaccagctgtactaccaggaagaccgcagtgaaatcagtgactttgaattt
gacaagttattggaagagctcattcaactggaagcgcaattcccagcacttcaggacaaa
aacagtcctacccaacatgttggcggcgccattaccaaggaattcgaaacagtggaacat
gaaacacgcatgctttcattgggaaatacctacagcaaagaagaactcctcgcctttgac
gaacgtgtcgccaaagggttaggccaccgcggttacagttatttctgcgaattgaaattt
gatggtgtagccatcagcttagtgtatgaaaatggtgaattggtaagggctgtgacccgt
ggggatgggtacaggggcgataacgtcactgccaatgtaaaaaccatcaaaaacatccca
ctttacctgcaaggcgatgacattcctgataaattcgagattcggggagagatttttctt
ccgattaaagaatttgaaaaaatcaatgccgcacgggaagccaatggcgaagcattactg
gccaatccgcgaaacactgcctctggcaccttaaaaatgcaggacagcagtatcgtcgcc
aagcggcgcctaaattgttacttctatcaattgctaggtgatgaaatcgacgtagatcaa
catgacgaggccatgcaccttcttgaaaaatggggctttaacatctcaccgacctataaa
aactgcacggacatcaatgccgtttttgaatacattgaatcttggcgtgaaaaacgccac
accttgtctttggacactgacggtgttgtgctcaaagtcaatgactatgcacagcgggaa
gaactagggttcacggctaaaatcccgcgctgggccattgcctataagtacaaagcagaa
agtgcagaaagcgagctcatgtcggttacttatcaggtgggccgtaccggggccattaca
ccagtggccaacctctctccggtcttgctggccggtaccacggtaaagcgtgcttcccta
cacaacgccaatgagatcaaacgactggacctgcacaatggcgacgtggtcttcgtggaa
aaaggcggggaaatcatcccaaaaataaccgctgtcgcggtggaaaaaagaaaggctgac
gccaaaccggtctcctacatcacgcactgcccagaatgtggcacagcgctcgaaagaaaa
gaaggcgaagcaaagcacttctgtccgaacagtgcgtcatgtccgccgcaagtactcgga
cgtatcgagcacttcgtccataaacgtgccatgaatattgacagcatgggaaccgagcgg
atcagggcactgatcaatcaaggctatgtagaacaccctgctgatctctatgagctgaac
cacaaaaaagaccaattgctgggattggaaatcaacgccgagcaatacgaaaaaagtagt
gatggctatttatatgtagccctaaggaaagcgctctttgctgttacagatggcatttca
ctttcagccatataccagtaccttgaagaaaccgaaacactggaacagcatctaaagcta
aaacaatttacggacttcatccaccatcaaaataagaaggtatcccttaaccttgccgct
gtcgacaagctgaaaaatctattgggccagctcgctcatgatcaaattgaggatttcctg
cctgtttcagcagtgatggccatgtttgtgggaaaccagctttcactggaagccctgcac
caactgagcctacaaaagaacactgtccatgacatcgttttggcgtttgattttgagctg
catcgagaccaggaagataaaatcaaaaagctgaaaggcaacactttccaagaaggggtc
atctccaatatgctctccggaattgctgcttccaaagaacagcctttcgaaaaagttctt
tttgctttgggcatcaggaatatcggggaaaacactgcgcagctcttggccaggcatttt
aagaccatcgaaaaccttggccaagcgagtacagaacagctcctggatatcaatggcgta
ggagaaacgctggtcaacagtatccgggaattctttgaccaagaagaaaaccaagctaat
atccagcggctaaaagcccacggtttacactttgaaatcaaatccgaggatcttcccgaa
gtaaaaggcaacgcccttgaagggctcaaagtactggcatccggtaaatttgagcacttt
aagcgtgatgagatcatcgaagccatttcggcccatgggggtacttatttgaaatccgtt
tcaaaaaacctggacctgatcatcgaaggagctgatatgggaccaagtaaaaaagaaaaa
gctgaaaaactcggcataaaaatgatatctgaaaatgaattcttaagcatgatagcagac
tag
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