Enterobacter chuandaensis: RQP59_17125
Help
Entry
RQP59_17125 CDS
T11050
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
echu Enterobacter chuandaensis
Pathway
echu03030
DNA replication
echu03410
Base excision repair
echu03420
Nucleotide excision repair
echu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
echu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RQP59_17125 (ligA)
03410 Base excision repair
RQP59_17125 (ligA)
03420 Nucleotide excision repair
RQP59_17125 (ligA)
03430 Mismatch repair
RQP59_17125 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
echu03032
]
RQP59_17125 (ligA)
03400 DNA repair and recombination proteins [BR:
echu03400
]
RQP59_17125 (ligA)
Enzymes [BR:
echu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RQP59_17125 (ligA)
DNA replication proteins [BR:
echu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RQP59_17125 (ligA)
DNA repair and recombination proteins [BR:
echu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RQP59_17125 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RQP59_17125 (ligA)
MMR (mismatch excision repair)
DNA ligase
RQP59_17125 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RQP59_17125 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
Prok-E2_C
DZR_2
DUF2229
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
WNS36789
UniProt:
A0AA96RT58
LinkDB
All DBs
Position
complement(3511649..3513664)
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAEPLGAFSQVRHEVPMLSLDNAFDEESFLAFNKRVQDRLKSSDSLTWCCELKLDGLA
VSLLYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLQGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGDLPDTHL
GRLLQFKAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVESERPDDTREVVFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEAAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEK
ASIDELQKVPDVGIVVATHVFNFFAEESNRDVIGQLLEEGIKWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaactcactgaactgcgaaccacgcttcgccatcatgaatat
ctctatcatgttatggacgcgccggaagtgccggatgcggaatatgaccgcctgatgcgc
gagctgcgcgagctggaggcgcagcatccggaattgattacgccggattcccctacccag
cgcgtcggtgctgagccgctgggggcattcagccaggtgcgccacgaagtgccaatgctg
tcgctggacaacgcctttgatgaagagagcttcctcgcgtttaacaagcgcgtgcaggac
cgtctgaagagcagcgactccctcacctggtgctgtgagctgaagctcgacggcctggcg
gtcagccttctttacgaaaacggcgtgctggtacgggccgccacgcgtggcgacggtacg
acgggggaagacatcaccaccaacgtgcgaaccatccgtgctatcccgctgaagctgcag
ggcgacaacattcctgcgcgtctggaagtgcgcggcgaggtgtttctcccgcaggcgggc
ttcgaaaaaatcaatgaagaagcgcgtcgcaccggtgggaaagtgtttgctaacccgcgt
aacgcggcggcaggctctctgcgccagcttgacccgcgtatcaccgcgaagcgaccgctt
actttcttctgctacggtgtcggtattctggagggtggcgatctgccggatacgcacctc
gggcgtctgctgcagtttaaagcctggggcctgccggtgagcaaccgcgttcagctctgc
gactcgccggaagcggtgctggcgttctaccacaaagtggaagaggaccgcccgacgctc
ggctttgatattgatggcgttgtcatcaaggtcaattcgctggcgctgcaggagcagctt
ggctttgtggcgcgcgcgccgcgctgggcggtggcgtttaagttccctgctcaggagcag
atgacctttgttcgcgacgtggagttccaggtaggacgtacgggggccattacgccagtc
gcacgtctggagccggtgcaggtcgcgggcgtgctggtgagcaacgctacgctgcataac
gccgatgaaatcgaacgtctgggcctgcgcattggcgacaaagtggtgattcgccgcgcg
ggcgatgttatcccgcaggtggtcaacgtcgtagagtcagaacgtcctgatgatacgcgc
gaggttgttttcccgacccactgcccggtgtgcggctctgacgttgagcgtgtggaaggc
gaagcggtggcccgctgtacgggcggcctgatctgcggcgcgcagcgtaaagagtccctg
aagcactttgtctcccgtcgggcgatggacgtcgacggcatgggcgacaagattatcgat
cagctggttgagaaagagtatgtccatacgccagcagatctcttcaggctgacggcaggt
aaactgaccggcctggatcgcatgggtccgaagtcagcccagaacgtggttaatgcgctg
gaggcggcgaaagagacgaccttcgcccgcttcctgtacgcgctgggcattcgtgaagtg
ggcgaagcgacggcggcaggattagcagcgtactttggtacgctggaggcgctggaaaag
gcaagcattgacgagctgcagaaagtcccggacgtcggcatcgtcgtcgccacgcacgtc
tttaacttcttcgccgaagagagcaaccgcgacgtcatcggccagcttctggaggagggc
atcaagtggcccgcgccggtggtggtcaacgccgaagagatcgacagtccgttcgccggg
aaaaccgtggttttgaccggtagcctgagccagctttcacgcgacgatgcgaaagcgcgc
ctggtggcgctgggggccaaagtggcgggcagcgtgtcgaagaaaaccgacctggtgatt
gccggggaagcggcgggttctaagctggcgaaagctcaggagctcggcattgaggttatc
gacgaagcggaaatgatgcgtctgttaggagagtaa
DBGET
integrated database retrieval system
