Ehrlichia chaffeensis Wakulla: ECHWAK_0804
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Entry
ECHWAK_0804 CDS
T03364
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
echw
Ehrlichia chaffeensis Wakulla
Pathway
echw03030
DNA replication
echw03410
Base excision repair
echw03420
Nucleotide excision repair
echw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
echw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ECHWAK_0804 (ligA)
03410 Base excision repair
ECHWAK_0804 (ligA)
03420 Nucleotide excision repair
ECHWAK_0804 (ligA)
03430 Mismatch repair
ECHWAK_0804 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
echw03032
]
ECHWAK_0804 (ligA)
03400 DNA repair and recombination proteins [BR:
echw03400
]
ECHWAK_0804 (ligA)
Enzymes [BR:
echw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ECHWAK_0804 (ligA)
DNA replication proteins [BR:
echw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ECHWAK_0804 (ligA)
DNA repair and recombination proteins [BR:
echw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ECHWAK_0804 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ECHWAK_0804 (ligA)
MMR (mismatch excision repair)
DNA ligase
ECHWAK_0804 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ECHWAK_0804 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
Bact_hydrolase
Zn_ribbon_ACC
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AHX09549
LinkDB
All DBs
Position
912895..914925
Genome browser
AA seq
676 aa
AA seq
DB search
MVDQEKAKLELDKLNKQIQHHDVLYYVQDNPEISDAEYDELCRKRNLILNAFPKLTQSND
YQNNIGSSPDTKFAKVKHEEKMFSLDNAFNQQDVEKFITRTKKFLNINDNQSIPLSCELK
IDGLSFSVIYKKGEIYQASTRGNGYFGENITTNVKTIKNLPHIIHNAPDLLEVRGEIYID
RCDFIQLNNDGNNFANPRNAAAGSVRQLDHNITAQRKLKYFMYTIVNTACLTQEELLYQL
KIWGFCVNEHTITTDNIEEAFNFYNQVYNNRSNINYDIDGIIYKVNDIKSQHILGTTSKS
PRWAIAYKFPAAEAKTQLNKISIQIGRTGVLTPIAELSPINIGGVIVTRASLHNKNEIER
KDIREGDYVIVKRAGDVIPQIVDVDKNLRTQELTKFVFPTTCPSCGSSVYQAKQEASIYC
TGELFCKDQILEKIKHFVSKDAFNIIGFGKKQLLFFYEQRLITNITDIFTLEEKISNSDV
KLESLHGWGEKSMSNLFSAINNSKVISLENFIFALGIRFIGKYIAKILANHFSSYETWYN
EMLKLAQNEDYSLNIQQIGSKTIGSLKMFFSQPHNLNMINDLVKHLTITDTQSSSYLSLI
HGKIIVFTGELSSMSRSEAKIRSETAGAKVSSSLSKNTDFLIAGNNPGSKYKKAQSLNVQ
ILTEDLWLQYTQSSEN
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggtcgaccaggaaaaagctaaattagagttagataaattaaataagcaaatacagcac
catgatgttctttattatgtacaggacaatccagaaatcagtgatgctgaatatgatgag
ttatgtcgcaaaagaaatttaattcttaacgcctttccaaaactcacacaaagtaacgat
taccaaaacaatataggtagttctccagacacaaagtttgctaaggttaaacatgaagag
aaaatgttttccttagataacgcttttaatcaacaagatgtagagaaattcatcacaaga
actaaaaagttcttaaacatcaatgacaatcaatcaataccattatcttgcgaattaaaa
attgatggactatcattttccgtcatatataaaaaaggagaaatctatcaagcatccaca
agaggtaatggatattttggtgaaaatattacaaccaatgtcaaaactataaaaaatcta
ccacatattattcacaatgcaccagatcttctagaagtcaggggagaaatatatatagat
cgctgtgattttatacaacttaataatgatgggaataattttgcaaatccacgcaacgcc
gcagccggatctgtaagacaactagatcataacattactgcccaacgtaaactaaaatat
tttatgtatacaatagtcaacactgcatgtctaacacaagaagaattattataccaatta
aaaatctggggcttttgtgtaaatgaacatactattactacagataatattgaagaggct
tttaatttttacaatcaagtttataacaatagaagtaatatcaactatgatattgatggt
ataatatacaaagttaacgatatcaaatcacaacatatcttaggaacaacaagtaaatca
ccaagatgggctatagcatataagtttcctgctgcagaagcaaaaacccaattaaataaa
atttccatacaaattggcaggactggtgtacttacacccattgcagaactttctcctata
aatattggtggggtcatagttacaagagcaagtttacacaacaaaaatgaaatagagcgt
aaagatatacgtgaaggcgactatgttattgtaaaaagagcaggagatgtaatacctcaa
atcgtggatgtagataaaaatttaagaactcaagaactaacaaaattcgttttcccaaca
acatgtccatcatgtggtagtagtgtatatcaagcaaagcaagaagcatcaatatactgt
actggtgaattattttgtaaagatcaaatcctggaaaaaataaagcattttgtttcaaaa
gacgcttttaacattattggatttgggaaaaaacagctcttatttttctatgaacaaaga
ttaataacaaatattaccgacatattcacattagaagaaaaaataagtaatagtgacgta
aaattagagtcattacatgggtggggtgaaaaatccatgagtaacctattttctgctata
aataacagtaaagtaatcagcttggaaaattttatttttgcgttaggaataagattcata
ggaaagtacatagcaaaaatactagctaaccatttttcatcatatgaaacatggtataat
gagatgctcaagttagcacagaatgaagattactcgctaaacatacaacagatagggtcc
aaaactattggttcactcaaaatgttttttagtcaaccacataatttaaatatgattaat
gatttagtaaaacacctaacaataacagatacacagtctagctcttatctatcactcatt
catggaaagatcatagtttttactggagaattatcaagtatgtcaagatctgaagcaaaa
ataaggtcagaaactgcaggagcaaaagtttcttcatcattatcaaaaaatacagatttc
ctaattgcaggaaacaatccaggatcaaaatataaaaaagcacaatctctcaatgtacag
attttaactgaagatttatggttacaatatacccaatcaagtgaaaattga
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