KEGG   Escherichia coli K-12 W3110: JW1114
Entry
JW1114            CDS       T00068                                 
Symbol
ycfD
Name
(GenBank) conserved hypothetical protein
  KO
K18850  50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
Organism
ecj  Escherichia coli K-12 W3110
Brite
KEGG Orthology (KO) [BR:ecj00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ecj03009]
    JW1114 (ycfD)
Enzymes [BR:ecj01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.47  [50S ribosomal protein L16]-arginine 3-hydroxylase
     JW1114 (ycfD)
Ribosome biogenesis [BR:ecj03009]
 Prokaryotic type
  ribosomal protein modification factors
   JW1114 (ycfD)
SSDB
Motif
Pfam: JmjC_2 ROXA-like_wH Cupin_1 Cupin_2 AraC_binding Tup_N
Other DBs
NCBI-ProteinID: BAA35950
UniProt: P27431
Structure
LinkDB
Position
complement(1188696..1189817)
AA seq 373 aa
MEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELAGLAMESEVDSRLVSHQDGK
WQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRELPDWRIDDLMISFSVPGG
GVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHCPHPDLLQVDPFEAIIDEELEPGDILY
IPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYVLQRELGGNYYSDPDVPPRAHPA
DVLPQEMDKLREMMLELINQPEHFKQWFGEFISQSRHELDIAPPEPPYQPDEIYDALKQG
EVLVRLGGLRVLRIGDDVYANGEKIDSPHRPALDALASNIALTAENFGDALEDPSFLAML
AALVNSGYWFFEG
NT seq 1122 nt   +upstreamnt  +downstreamnt
atggaataccaactcactcttaactggcccgattttcttgaacgtcactggcagaaacgc
ccggtggtgttaaaacgcggctttaataattttattgacccgatctctccagacgagttg
gcgggtctggcgatggaaagcgaagttgacagtcgactggtcagtcaccaggatggcaaa
tggcaggtcagccacggcccgttcgaaagctacgatcatctcggtgaaaccaactggtca
ttactggtacaggcagtgaaccactggcatgagccgaccgccgcgctgatgcgaccgttc
cgtgaactaccggactggcgtattgatgatctgatgatttctttttctgtacccggcggc
ggcgtcggcccgcatctcgatcagtacgacgtgtttatcattcagggtaccggacgtcgt
cgctggcgagtgggcgaaaagctgcaaatgaaacagcactgcccacatccggatctgtta
caggtcgatccgttcgaagccatcatcgatgaagagctggagcctggtgatattctttat
attccgccaggattcccgcatgaaggctacgcgctggaaaatgcgatgaactattccgtg
ggctttcgcgcgccaaatacgcgggaactgattagtggatttgccgattatgtgctgcaa
cgtgaactgggcggcaactactacagcgatccggatgttccacctcgcgctcatcctgcg
gatgttctgccgcaagagatggataaactgcgtgagatgatgctcgaattgatcaaccag
ccggaacactttaagcaatggtttggcgagtttatatcccagtcacgtcatgaactggat
atcgcgccgccagagccgccttatcagccggatgaaatctacgatgcgctgaaacaaggt
gaagtgctggtgcgcctgggtggtctgcgcgtattgcgcattggcgacgacgtgtatgcc
aatggtgagaagatcgattccccgcaccgtccggcactggatgcactcgccagcaacatt
gcgctgactgcggagaattttggcgatgcgctggaagatccgtcattcctcgcgatgctc
gcggcgctggtcaatagcgggtattggttcttcgaagggtaa

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