Enterocloster clostridioformis: QMP25_30835
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Entry
QMP25_30835 CDS
T10536
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eclf Enterocloster clostridioformis
Pathway
eclf03030
DNA replication
eclf03410
Base excision repair
eclf03420
Nucleotide excision repair
eclf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eclf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QMP25_30835 (ligA)
03410 Base excision repair
QMP25_30835 (ligA)
03420 Nucleotide excision repair
QMP25_30835 (ligA)
03430 Mismatch repair
QMP25_30835 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eclf03032
]
QMP25_30835 (ligA)
03400 DNA repair and recombination proteins [BR:
eclf03400
]
QMP25_30835 (ligA)
Enzymes [BR:
eclf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QMP25_30835 (ligA)
DNA replication proteins [BR:
eclf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QMP25_30835 (ligA)
DNA repair and recombination proteins [BR:
eclf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QMP25_30835 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QMP25_30835 (ligA)
MMR (mismatch excision repair)
DNA ligase
QMP25_30835 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QMP25_30835 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
PTCB-BRCT
HHH_2
HHH_5
BRCT_2
Lar_restr_allev
Ogr_Delta
Motif
Other DBs
NCBI-ProteinID:
XBX12662
LinkDB
All DBs
Position
complement(5889533..5891548)
Genome browser
AA seq
671 aa
AA seq
DB search
MTQNAQERVQALTAQLNRYRDEYYNSNAPSVSDEVYDRMYDELTALEKETGIWMADSPTQ
TVGFQAVSELKKTNHPVPLLSLDKTKSVEELVSFAGEYQILLMLKLDGLTVKLTYEDGKL
VEAATRGDGDTGEVVTHNVRGISGIPQNIPCPGHLVVSGEAFIRPSDFKKLQEILTDSNG
ERYKNGRNLAAGSVRLLDAAVCRERKVMFMPFAVVEGFSEMESKSQKLRKLPELGFQVCK
FVISRRKLTCQEMADGIGKLRQFAEDSDIPIDGIVASYNNIAFSQSCGRTGHHYKDGLAF
KFEDELHETKLLSIEWNPSRSGEISPVAVFQPVEIDGCEVSRASLHNLSFIEGMELMPGC
RILVSKRNMIIPHVEENLDRGRFVMEQAVPGMCPCCGEPARIHESRSVENGKEKVTKTLF
CDNQNCETRRLRQFVHFVSQKAMNIEGLSEATLEKFIEKGWIHTYMDIYELDRHKNEIVN
MEGFGEKSWQRLWDAIQGSRNTTFERYLIAMDIPMVGNTASRTLAGEFHGSLEEFEDAVH
HQYDFTRLPDFGDTLHNNIHEWFYDEENLYVWEVLQQMLYIEKRTTEDNAATIPENPFVG
MTVVVTGKVEPYTRSGINEKIESLGAHAGSSVSRKTDYLICGENAGSKLAKAKELGIKVL
TPAQFFHMAGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgacacagaacgcacaggagagagtgcaggcgttgactgcacaattaaaccggtacagg
gatgaatattataacagcaatgccccgtccgtttcggatgaagtctatgacaggatgtat
gacgaactgacggcattggagaaggaaacggggatttggatggctgattcccccactcag
acagtgggatttcaggcggtcagcgaacttaaaaagacaaaccatccggtcccgctgctc
tcactggacaagaccaaaagcgtagaggaactggtctcctttgcaggggaatatcagatt
cttttgatgctgaagctggacggcctgacggtcaagctgacctatgaggatggaaaactg
gtcgaggctgctacccgtggtgacggagataccggcgaagtggtgacacacaatgtccgt
ggaatctccgggataccccagaacattccctgtccggggcatctggtggtgagcggggag
gcatttatccggcccagtgattttaagaaactgcaggaaatcctgaccgacagcaacggt
gagcgttataagaacggaaggaacctggctgccggttccgtgcgccttctggatgcggcg
gtctgccgggagcggaaagtgatgtttatgccctttgccgtggtggaagggttttcggaa
atggaatcaaagtcccagaaactgcggaaactcccggaactgggtttccaggtctgcaaa
tttgtcatcagcaggcggaaactgacctgccaggagatggcggacggcatcgggaagctg
cggcagtttgcggaggacagtgacatccccattgacgggatcgtggcatcctacaataac
attgccttctcccagtcctgcggcaggacaggccaccactataaagacgggctggctttt
aaatttgaggatgaactccacgaaacaaagctgctttccattgagtggaatccttcccgt
tccggggagatatcaccggtggcggtttttcagccggtggagatagacggctgtgaggta
tccagggcaagcctgcacaacctttcctttatcgaggggatggagctgatgcccggctgc
cggatactggtcagcaaacggaacatgattattccgcatgtggaagaaaatctggaccgt
ggccgctttgttatggagcaggccgtgccggggatgtgtccctgctgcggggagcctgcc
cgcatccatgagagccgttccgtggagaatggaaaagaaaaggtgacaaaaaccctgttc
tgcgataaccagaactgcgaaaccagacgcctgcgccagtttgtgcattttgtcagccag
aaagccatgaacattgaaggtctgtccgaagccactttggagaaattcattgaaaaagga
tggattcacacttatatggatatttatgagcttgacaggcataaaaacgagattgtgaac
atggaaggttttggggagaagtcctggcagcgtctctgggatgccatccagggcagcagg
aataccacctttgagcggtatctgatcgctatggatatccccatggtgggaaatacggcc
agccggacgcttgccggagagttccatggcagtctggaggaatttgaggatgcggtgcat
catcagtatgactttacgcggctccctgactttggggataccctgcacaacaatatccat
gagtggttttatgatgaagaaaatttgtatgtatgggaggtattacagcaaatgttatat
attgaaaaaaggacaacagaagacaacgcagccacaataccggaaaatccttttgtgggg
atgaccgttgtggtgaccgggaaagtggagccttatacccgcagcggcatcaatgagaaa
attgaatctctgggcgctcatgccgggagttcggtgagcagaaagaccgattacctgatc
tgtggggaaaatgccggaagtaagcttgccaaagcgaaagaacttgggataaaggttctg
acaccggcccagtttttccatatggccggcgaatag
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