Enterobacter cloacae ECNIH5: ECNIH5_00760
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Entry
ECNIH5_00760 CDS
T03706
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ecli
Enterobacter cloacae ECNIH5
Pathway
ecli03030
DNA replication
ecli03410
Base excision repair
ecli03420
Nucleotide excision repair
ecli03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ECNIH5_00760 (ligB)
03410 Base excision repair
ECNIH5_00760 (ligB)
03420 Nucleotide excision repair
ECNIH5_00760 (ligB)
03430 Mismatch repair
ECNIH5_00760 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecli03032
]
ECNIH5_00760 (ligB)
03400 DNA repair and recombination proteins [BR:
ecli03400
]
ECNIH5_00760 (ligB)
Enzymes [BR:
ecli01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ECNIH5_00760 (ligB)
DNA replication proteins [BR:
ecli03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ECNIH5_00760 (ligB)
DNA repair and recombination proteins [BR:
ecli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ECNIH5_00760 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ECNIH5_00760 (ligB)
MMR (mismatch excision repair)
DNA ligase
ECNIH5_00760 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ECNIH5_00760 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
RNA_ligase
DUF3701
HHH
Motif
Other DBs
NCBI-ProteinID:
AIX57371
LinkDB
All DBs
Position
158848..160518
Genome browser
AA seq
556 aa
AA seq
DB search
MWRWISGFALLWCSTGLAVCPVWSQAKAEKEIVALSAQIKRWDDAYWKQGVSDVDDGVYD
QLNARLNQWQRCFGHVSSEERPPPLTGSVTHPVAHTGVHKVASKAELSQWMRARQHLWMQ
PKVDGVAVTLVYQGGKLVRAISRGNGVKGEDWTAQVRSIPSVPQNLSGPLANSVLQGELF
WIHENHIQRQMGGMNMRAKVAGAMMRHNDSALLRQLGVFIWAWPDGPKEMQVSLDALSKA
GFTLTARYTLPAASVNAVEAQRSAWHTTALPFATDGIVVRSADEPAGDGWLPGEGRWVVA
WKYTPVAQVAEVRGIQFGVGRTGKVSVVAELDPVKLDDKQVRRVSLGSVTRWQRLDIVPG
DQVLISLAGQGIPRFDRVVWRGANREKPEPPALQYHSLTCFYASPACMEQFFARLTWLSS
KQGLGIEGLGEAGWRTLHQAHRFEHIFSWLTLTQAQLQSTPGFSAGRGLSLWHRFNMVRK
QPFIRWVTAMGIPLTKATLNAVGAASWQALNQRSAADWQALPGTGEEKAQQVVNWLHAPP
VDRLARWLAEQHINGF
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgatggataagcgggtttgcgctgttgtggtgtagcaccgggttagcggtatgc
ccggtatggtcgcaggcaaaagcagaaaaggaaattgtagcgctgagcgcgcagatcaaa
cgctgggacgatgcttactggaagcagggagtcagtgacgttgatgacggggtttacgat
cagcttaacgcgcggttgaaccagtggcagcgctgctttggtcatgtctcttccgaagag
agaccgccacctctgacaggtagtgtgacacacccggttgcgcatacgggcgtgcataag
gttgccagtaaagctgagctcagccagtggatgcgagcccggcaacatctctggatgcag
cccaaagtggatggcgtggctgtgacgctggtgtaccagggcgggaagcttgtccgggcc
attagccgtggcaacggtgtgaaaggtgaagactggacggcgcaggttcgatcaatcccc
tctgttccgcaaaacctgtccggccccctggcaaatagcgtcttacagggtgaactgttc
tggattcatgaaaaccacatccagcgtcagatgggggggatgaacatgcgggcaaaagtg
gcgggcgccatgatgcgtcataacgatagcgcacttctcaggcagctcggcgtgtttatc
tgggcctggccggatggacctaaagagatgcaggtatctctggatgcgttgtcaaaagcc
gggttcaccctgacggcgcgttatacgctgcccgccgcgtctgtgaatgcggtcgaagcg
cagcgttcagcgtggcatacaacagcattgccctttgccacggacggcattgtggtgcgt
tcagcggatgaacccgcgggcgacggttggttacccggtgaaggccgttgggttgtcgca
tggaaatatacgcctgtcgctcaggttgctgaagtacgagggatacagtttggcgtcggg
cgaacgggcaaggtgtccgttgtagccgaactggatccagtaaagcttgatgataaacag
gtgcggcgggtgagcctggggtcggtcacacgctggcagcggctggatattgttcccggc
gatcaggttctgataagcctcgccgggcaggggatcccccgattcgatcgagttgtctgg
cggggagcgaacagggaaaaaccagaacctccggccctgcagtaccactcgctgacctgt
ttttatgcctcaccagcgtgtatggaacagttctttgcccggttgacgtggcttagctcg
aaacaagggctagggatcgaggggttaggcgaggcgggctggcgaacgcttcatcaggcg
catcgtttcgagcatattttttcgtggttaacactgacgcaggcgcagctacagtccacg
cctggcttttccgccgggcgcgggttatcgctctggcatcgttttaatatggtgcgcaag
caaccttttattcgctgggtcacagcgatggggatcccgctgacaaaagccacgctgaat
gcggttggggcggcgtcgtggcaggcgctgaatcagcggagcgccgctgactggcaggct
ttgccgggaacaggtgaagagaaggcgcagcaggtcgttaactggctgcatgcgcctcct
gttgataggctggcaaggtggctggctgagcagcacattaacgggttctga
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