Enterobacter cloacae ECNIH4: ECNIH4_06705
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Entry
ECNIH4_06705 CDS
T03486
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ecln
Enterobacter cloacae ECNIH4
Pathway
ecln03030
DNA replication
ecln03410
Base excision repair
ecln03420
Nucleotide excision repair
ecln03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ECNIH4_06705 (ligA)
03410 Base excision repair
ECNIH4_06705 (ligA)
03420 Nucleotide excision repair
ECNIH4_06705 (ligA)
03430 Mismatch repair
ECNIH4_06705 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecln03032
]
ECNIH4_06705 (ligA)
03400 DNA repair and recombination proteins [BR:
ecln03400
]
ECNIH4_06705 (ligA)
Enzymes [BR:
ecln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ECNIH4_06705 (ligA)
DNA replication proteins [BR:
ecln03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ECNIH4_06705 (ligA)
DNA repair and recombination proteins [BR:
ecln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ECNIH4_06705 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ECNIH4_06705 (ligA)
MMR (mismatch excision repair)
DNA ligase
ECNIH4_06705 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ECNIH4_06705 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AIX53962
UniProt:
A0A6S5JV59
LinkDB
All DBs
Position
1392610..1394625
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTDLRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAEPLGAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDALTWCCELKLDGLA
VSLLYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLQGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLMQFKAWGLPVSNRVQLCDSPEAVLAFYQKVEADRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVVRRAGDVIPQVVNVVESERPDDTREVVFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLDRMGPKSAQNVVNALEAAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEK
ASIDELQKVPDVGIVVATHVFNFFAEESNREVIGKLLAEGIKWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaactcactgacctgcgaaccacgcttcgccatcatgaatat
ctctatcatgttatggacgcgccggaggtgccggatgcggagtatgaccgcctgatgcgc
gaacttcgcgaactggaggcgcagcacccggaactcattacgccggattctcccacccag
cgcgtcggtgccgagccgctgggagcgttcagccagatacgccatgaagtgccgatgctg
tcgctggataacgtctttgatgaagagagcttcctcgcgtttaacaagcgcgtgcaggac
cgtctgaaaagcagcgacgctctcacctggtgctgcgagctgaagcttgatggcctggcg
gtcagtcttctctacgaaaacggcgtgctggtgcgtgccgccacgcgtggcgacggcacg
acgggtgaagacattacgaccaacgtgcgcaccatccgcgcaattccgctgaagctgcag
ggggacaatattcctgcgcgtctggaagtgcgcggcgaggtgttcctgccgcaggcgggt
ttcgagaaaatcaacgaagaagcgcgccgcaccggcgggaaagtatttgctaacccgcgt
aatgcggcggcaggctctttgcgccagcttgacccgcgtatcaccgcgaagcgaccgctc
actttcttctgctacggcgtggggatcctggagggaggcgagctgccggatacgcacctc
gggcgcctgatgcagtttaaggcgtggggcctgccggtgagtaaccgcgtacagctctgt
gactcgccagaagcggtactcgcgttctaccaaaaggtggaagcggaccgtccgacgctc
ggttttgatattgatggcgttgtcattaaggtgaactcactggcgcttcaggagcaactc
gggtttgtggcgcgtgcgccgcgctgggcggttgcgtttaagtttcctgctcaggaacag
atgaccttcgttcgcgacgtggagttccaggtcggccgtacgggcgccattaccccggtc
gcccgtcttgagcctgtgcaggtcgcgggcgtgctggtgagtaacgccacgctgcataac
gccgatgagattgaacgtctgggcctgcggattggtgacaaagtggtggttcgtcgcgcg
ggcgatgttattccgcaggtggtaaacgtcgttgagtctgaacgccctgatgatacgcgt
gaagtggtcttcccgacccattgcccggtgtgtggctctgacgtggagcgtgttgaaggt
gaggcggtagcgcgctgtacgggcggcctgatctgtggcgcgcagcgtaaagagtcactg
aagcacttcgtctcccgtcgcgccatggacgtcgacggcatgggcgataagattatcgat
cagctggttgaaaaagagtatgtgcatacgccagcggatctcttcaaactgacggcgggc
aagctgaccggtctggatcgcatggggccgaagtcggcgcagaacgtggttaacgctctg
gaagccgcaaaagagaccaccttcgcccgtttcctttacgcgctgggcatccgtgaagtg
ggggaagcgacggcagcaggtctggcggcgtactttggcacgctggaggcgctggaaaag
gcaagcatcgacgagctgcagaaagtgccggatgtcggcattgtagtcgccacgcacgtt
tttaacttctttgcggaagagagcaaccgcgaagtcattggcaaactgctggcagagggc
atcaaatggcccgcgccggtggtggttaatgccgaagagatcgacagtccgttcgccggt
aaaacggtggtgctgaccggcagcctgagccagctttcacgcgacgatgcgaaagcgcgt
ctggtggcgctgggcgcaaaagtggcgggcagcgtgtcgaagaaaaccgacctggtgatt
gccggggaagcagcgggttcgaagctggcgaaagcccaggaactcggcattgaggttatc
gacgaagcggaaatgatgcgtctgttaggagagtaa
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