Enterobacter hormaechei subsp. steigerwaltii: LI62_00980
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Entry
LI62_00980 CDS
T03708
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ecly
Enterobacter hormaechei subsp. steigerwaltii
Pathway
ecly03030
DNA replication
ecly03410
Base excision repair
ecly03420
Nucleotide excision repair
ecly03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LI62_00980 (ligB)
03410 Base excision repair
LI62_00980 (ligB)
03420 Nucleotide excision repair
LI62_00980 (ligB)
03430 Mismatch repair
LI62_00980 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecly03032
]
LI62_00980 (ligB)
03400 DNA repair and recombination proteins [BR:
ecly03400
]
LI62_00980 (ligB)
Enzymes [BR:
ecly01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LI62_00980 (ligB)
DNA replication proteins [BR:
ecly03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LI62_00980 (ligB)
DNA repair and recombination proteins [BR:
ecly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LI62_00980 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LI62_00980 (ligB)
MMR (mismatch excision repair)
DNA ligase
LI62_00980 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LI62_00980 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
RNA_ligase
DUF3701
HHH
HHH_5
HHH_2
Motif
Other DBs
NCBI-ProteinID:
AJB60702
LinkDB
All DBs
Position
147307..148977
Genome browser
AA seq
556 aa
AA seq
DB search
MVKWISILMIFLSSGAMAICPVWSPAKAGQEIAALKAQLTRWNDDYWKQGRSEVSDDVYD
RLNARLKQWQRCFHDEPLHDDLPAASGTVKHPFAHIGVHKVESKQALSRWMATQQDLWVQ
PKVDGVAVTLVYKNGKLVQAISRGDGLQGEEWTAQARMIPAIPQTLAGSLANSVLQGELF
LLREGHIQQRMGGMNARAKVAGAMMRATDRAALKQTGIFIWAWPNGPKAMKARLSTLAEA
GFTLTARYTVPVKNAADVEAQRTAWFKASLPFATDGIVVRASAEPPGERWLPGEGSWVVA
WKYLPVAQVTEVKAIHFTVGRTGRITAIAQLEPLMLDDKRVQRVSLGSVNRWQRLDIAPG
DQVLVSLAGQGIPRLDNVVWRNVDRRKPQPPSSRYNGLTCFYASPECMEQFFARLTWLSS
RQALDIEGMGESGWRTLYQAHRFEHLFSWLQLTQAQLTATAGISASHGAALWHQFNLARE
RPFIRWITAMGIPLARSTLRAAGDRTWQALIQRSEAEWRMLPGVGQEKARQIVNWLHQPQ
IDALAKWLAAEHIGGF
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaatggataagcatactgatgatcttcttaagcagcggggcgatggcaatctgc
ccggtctggtcaccggctaaagccgggcaggagatcgcggccctgaaggcgcagctgacc
cgctggaatgatgattactggaaacagggccgcagcgaggtgagcgacgacgtttacgac
aggcttaacgcccgcttaaaacagtggcagcgctgttttcacgatgaaccgctgcacgac
gatcttccagccgccagtgggacggtgaaacatcccttcgcccatatcggcgtgcataag
gtagaaagcaagcaggcgcttagccgctggatggcgacgcagcaggatctctgggtacag
ccaaaggtggatggtgttgcggtcaccctggtctacaaaaacggcaagctggtgcaggcg
attagccggggcgacggcttacagggggaagagtggacggcacaggcgcgaatgatcccc
gctattccgcaaacgctggccgggtcgcttgccaacagcgtgttgcagggtgaacttttt
ctgctgcgcgaggggcatatccagcagcggatgggagggatgaacgcgcgtgcgaaggta
gcgggagcgatgatgcgcgcgaccgatcgcgcagcgctgaagcagacaggcatttttata
tgggcctggccgaacggcccaaaagcgatgaaagcacgcctttccacgctggcggaggca
ggttttaccctgacggcccgctataccgtgccggttaaaaacgcggctgatgtggaggcg
cagcggacggcctggtttaaggcttcgttgcccttcgccacggatggcattgtggttcgc
gcctcggcagagccgccgggcgagcgatggctgccgggggaagggagttgggtcgtcgca
tggaaataccttcctgtggcccaggtgacggaagtcaaagcgattcactttaccgttggc
cgtaccgggcggatcaccgcgattgcgcagcttgagccgctgatgctcgacgataaacgc
gtacagcgcgtcagcttagggtcggttaaccgctggcagaggctggatattgcccccggc
gatcaggtgctggtaagcctggcgggacaaggtattccccggctggataacgtggtgtgg
cgcaatgtggatcgccgtaaaccgcagccgccctcatcgcgctataacggcttaacctgt
ttctatgcctccccggagtgcatggagcaattttttgcccggctgacgtggctaagttcc
aggcaggcgttagatatcgaaggaatgggcgaatcaggatggcggaccctctatcaggcg
catcggtttgagcacctcttctcctggctacagctcacgcaggcgcagctcaccgcgacg
gcggggatatcggcatcgcatggcgctgcgctgtggcatcagtttaacctggcgcgggag
cgaccttttatccgctggatcaccgcgatgggaataccgctggcccggtcgacgctcagg
gcggcaggggatcgcacctggcaggcgctgattcagcgaagcgaagcggagtggcggatg
ctgccgggtgtcgggcaggagaaggcccgccagatcgtaaactggctgcatcagcctcag
attgatgccctggcaaaatggctggccgcagagcacatcggtggattttaa
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