Escherichia coli SMS-3-5 (environmental): EcSMS35_3981
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Entry
EcSMS35_3981 CDS
T00672
Symbol
ligB
Name
(GenBank) NAD(+)-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ecm
Escherichia coli SMS-3-5 (environmental)
Pathway
ecm03030
DNA replication
ecm03410
Base excision repair
ecm03420
Nucleotide excision repair
ecm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EcSMS35_3981 (ligB)
03410 Base excision repair
EcSMS35_3981 (ligB)
03420 Nucleotide excision repair
EcSMS35_3981 (ligB)
03430 Mismatch repair
EcSMS35_3981 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecm03032
]
EcSMS35_3981 (ligB)
03400 DNA repair and recombination proteins [BR:
ecm03400
]
EcSMS35_3981 (ligB)
Enzymes [BR:
ecm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EcSMS35_3981 (ligB)
DNA replication proteins [BR:
ecm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EcSMS35_3981 (ligB)
DNA repair and recombination proteins [BR:
ecm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EcSMS35_3981 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EcSMS35_3981 (ligB)
MMR (mismatch excision repair)
DNA ligase
EcSMS35_3981 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EcSMS35_3981 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACB17022
UniProt:
B1LK84
LinkDB
All DBs
Position
complement(4057512..4059194)
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AA seq
560 aa
AA seq
DB search
MKVWMAILISILCWQSSAWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGV
YDQLSARLTQWQRCFGNETRDAMMPPLNGAVMHPVAHTGVRKMADKNALSLWMRERSDLW
VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANSTLQGE
IFLKRKGHIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLMTDRLKELA
TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVRAAKEPESRHWLPGQAEWL
VAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWDIA
PGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWL
GSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFNLA
RQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKEN
AQIKKLGSWLAAQQITGFEP
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtatggatggcgatattaataagtatcttgtgctggcaatcatcggcgtgggca
gtctgtccggcctggtcgccagccagagcacaggaagaaatttcccgcctgcaacagcaa
ataaaacagtgggacgatgactactggaaggaagggaaaagtgaggtggaagacggtgtt
tacgatcagttaagcgcccgtctcacgcagtggcaacgctgttttgggaacgagactcgc
gacgctatgatgccgcctttaaacggtgcggttatgcatccggttgcccatacgggtgta
cgcaaaatggcggataaaaacgcattaagtctgtggatgcgcgaacgtagcgatctttgg
gtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgggacgggaaactgaac
aaagcaatcagtcgcggtaatggcctgaaaggcgaggactggacgcagaaagttcgctta
atttccgctgtgccgcaaaccgttagcgggcctttagccaacagcacgcttcagggggaa
atatttctcaagcgtaaggggcatatccaacaacaaatggggggaataaatgcccgcgca
aaagttgctggcctgatgatgcgccaggggaatagcgatacgctaaactcactggctgtt
tttgtctgggcatggccggatggaccgcagttaatgaccgatcgtttaaaggagctggct
accgcaggttttactctaacgcagacgtatacccgtgcggttaaaaatgctgatgaggtt
gcgcacgtacgcaatgagtggtggaaagcaaaattacccttcgtcaccgatggcgtggtt
gtgcgagcggcgaaagaacccgaatcccgtcattggctaccgggccaggcggagtggctg
gtggcctggaaatatcaacctgtagctcaggttgccgaagtgaaggcgattcagtttgcg
gtgggtaagagcggtaaaatatcggtggttgcgtcactcgcacctgtcatgctggatgat
aaaaaagtccagcgggtgaatattggttccgtcaggcgctggcaggagtgggatattgcg
cctggtgatcagatcctcgtcagccttgccggtcagggtattcctcgcattgatgatgtg
gtctggcgcggtgcagaacgtacaaaaccgacaccaccagaaaaccgctttaactcgttg
acctgctactttgcttctgatgtttgtcaggaacagttcatttcacgcttagtctggctg
gggtcaaaacaggttcttgggctggatggcattggtgaggccggctggcgcgcgctgcat
cagactcatcgctttgagcatatcttttcctggcttttattaacgccagagcaattacag
aacacgccggggatcgcgaaaagtaaaagtgcgcagttatggcatcaatttaatctggct
cgtcagcagccttttactcgctgggtgatggcaatgggaataccgctaacccgggcggcg
cttaatgccagtgatgaacggtcctggtcgcaacttttatttagcacagaacagttctgg
cagcagttgccggggactggatcggggcgcgccagacaggttattgaatggaaggaaaat
gcgcaaatcaagaagctgggcagttggctggctgcccagcagatcacaggttttgaacct
tag
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