Escherichia coli B C3029: C3029_22365
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Entry
C3029_22365 CDS
T09610
Symbol
ligB
Name
(GenBank) aromatic ring-opening dioxygenase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ecob
Escherichia coli B C3029
Pathway
ecob03030
DNA replication
ecob03410
Base excision repair
ecob03420
Nucleotide excision repair
ecob03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C3029_22365 (ligB)
03410 Base excision repair
C3029_22365 (ligB)
03420 Nucleotide excision repair
C3029_22365 (ligB)
03430 Mismatch repair
C3029_22365 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecob03032
]
C3029_22365 (ligB)
03400 DNA repair and recombination proteins [BR:
ecob03400
]
C3029_22365 (ligB)
Enzymes [BR:
ecob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C3029_22365 (ligB)
DNA replication proteins [BR:
ecob03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C3029_22365 (ligB)
DNA repair and recombination proteins [BR:
ecob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C3029_22365 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C3029_22365 (ligB)
MMR (mismatch excision repair)
DNA ligase
C3029_22365 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C3029_22365 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AMH28596
LinkDB
All DBs
Position
complement(4482940..4484622)
Genome browser
AA seq
560 aa
AA seq
DB search
MKVWMAILISILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGV
YDQLSARLTQWQRCFGSEPRDVMMPPLNGAVMHPVAHTGVRKMVDKNALSLWMRERSDLW
VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANSTLQGE
IFLQREGHIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMSDRLKELA
TAGFTLTQTYTRAVKNADEVARVRNEWWKAELPFVTDGVVVRAAKEPESRHWLPGQAEWL
VAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWDIA
PGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWL
GAKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFNLA
RKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKEN
AQIKKLGSWLAAQQITGFEP
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtatggatggcgatattaataagtatcttgtgctggcaatcatctgtgtgggcg
gtctgtccggcctggtcgccagccagagcacaggaagaaatttcccgcctgcaacagcaa
ataaaacagtgggacgatgactactggaaggaaggaaaaagtgaggtggaagacggtgtt
tacgatcagttaagcgcccgtcttacgcagtggcaacgctgctttgggagcgagccccgc
gacgtgatgatgccgcctttaaatggtgcggttatgcatccggttgcccatacgggtgta
cgcaaaatggtggataaaaacgcattaagtctgtggatgcgagaacgtagcgatctttgg
gtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgggacgggaaactgaac
aaagcaatcagtcgcggtaatggcctgaaaggcgaggactggacgcagaaagttagctta
atttccgctgtgccgcaaaccgttagcgggcctttagccaacagtacgcttcagggggaa
atatttctccagcgcgaggggcatatccaacaacaaatggggggaataaatgcccgcgca
aaagttgctggcttgatgatgcgccaggacgatagcgacacgctgaattctctgggcgtt
tttgtctgggcatggccggatggaccgcagttaatgtctgatcgtttaaaagagctggct
accgcaggttttactctaacgcagacgtatacccgtgcggtgaaaaatgctgatgaagtt
gcgcgcgtacgcaatgagtggtggaaagcggaattacccttcgtcaccgatggcgtagtt
gtacgagcggcgaaagagccagaatcccgccattggctaccgggccaggcagagtggctg
gtggcctggaaatatcaacctgtagctcaggttgccgaagtgaaggcaattcagtttgcg
gtgggtaagagcggtaaaatatcggtggttgcgtcactcgcacctgtcatgctggatgat
aaaaaagtccagcgggtgaatattggttccgtcaggcgctggcaggagtgggatattgcg
cctggtgatcagattctcgtcagccttgccggtcagggtattcctcgcattgatgatgtg
gtgtggcgcggtgcagaacgtacaaaaccgacaccgccagaaaaccgctttaactcgttg
acctgctactttgcttctgatgtttgtcaggaacagttcatttcacgcttagtctggctg
ggggcaaaacaggttcttgggctggatggcattggtgaggccggctggcgcgcgctgcat
cagactcatcgctttgagcatatcttttcctggcttttattaacgccagagcaattacag
aacacgccggggatcgcgaaaagtaaaagtgcgcagctatggcatcagtttaatctggct
cgtaagcagccttttactcgctgggtgatggcaatgggaataccgctaacccgggcggcg
cttaatgccagtgatgaacggtcctggtcgcaacttttatttagcacggagcagttctgg
cagcagctgccgggcactggatcggggcgcgccagacaggttattgaatggaaggaaaat
gcgcaaatcaagaagctgggcagttggctggctgcccagcagatcacaggttttgaacct
tag
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