KEGG   Escherichia coli O145 H28 RM13516 (EHEC): ECRM13516_5607
Entry
ECRM13516_5607    CDS       T03011                                 
Symbol
virD4
Name
(GenBank) Type IV secretion system protein VirD4
  KO
K03205  type IV secretion system protein VirD4 [EC:7.4.2.8]
Organism
ecoh  Escherichia coli O145:H28 RM13516 (EHEC)
Pathway
ecoh03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:ecoh00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    ECRM13516_5607 (virD4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:ecoh02044]
    ECRM13516_5607 (virD4)
Enzymes [BR:ecoh01000]
 7. Translocases
  7.4  Catalysing the translocation of amino acids and peptides
   7.4.2  Linked to the hydrolysis of a nucleoside triphosphate
    7.4.2.8  protein-secreting ATPase
     ECRM13516_5607 (virD4)
Secretion system [BR:ecoh02044]
 Type IV secretion system
  Conjugal DNA-protein transfer (VirB/D) protein
   ECRM13516_5607 (virD4)
SSDB
Motif
Pfam: T4SS-DNA_transf TraG-D_C TrwB_AAD_bind
Other DBs
NCBI-ProteinID: AHG18185
LinkDB
Position
pRM13516:complement(40097..42055)
AA seq 652 aa
MDAKKTGGLILFLLLLLVGVLIASNYLGGYTALRYSSVDMSLLKWDTFHSVISTFSGNPQ
YKKLVFMAWFGFSVPLIFFAIFMLIVVIGIMPKKVIYGDARLATDMDLSKSGFFPDKKSP
YKHPPILIGKMFKGRYKKQFIYFAGQQFLILYAPTRSGKGVGIVIPNCVNYPGSMVILDI
KLENWFLSAGFRQKELGQKCFLFAPAGYAETIDQAIKGQIRSHRWNPLDCVSRSDLLRET
DLAKIAAILIPASDDPIWSDSARNLFVGLGLYLLDKERFHLEQKAKGHNVPDVLVSISAI
LKTSVPDGGKDLAAWMGQEIENRSWISDKTKSFFFKFMSAPDRTRGSIETNFSSPLSIFS
NPITAEATNFSDFDIRDIRKKPMSIYLGLTPDALITHEKIVNLFFSLLVNENCRELPEHN
PDLKYQCLILLDEFTSMGKSEVIERAVGFTAGYNLRFMFILQNEGQGQKSDMYGQEGWTT
FTENSAVVLYYPPKSKNALAKKISEEIGVRDMKISKRSISSGGGKGGSSRTRNDDVIERP
VLLPEEIVSLRDKKNKARNIAIREIITSEFSRPFIANKIIWFEEPEFKRRVDIARNNHVD
IPNLFTQEVMDEIAKIAEIYLPKAGGKKVMVAGGNVITNPDLDNHDKTDVSE
NT seq 1959 nt   +upstreamnt  +downstreamnt
atggatgcaaaaaagacggggggattaattctcttcctgttactgcttcttgtgggtgtg
cttatagcctcaaactatctcggtggatacacagcattaagatattcatccgttgatatg
tctttgctcaagtgggatacattccattctgtaatctcaacattttctggcaacccacaa
tataaaaaacttgtttttatggcatggtttggattcagcgttccattaatattctttgcc
atattcatgttaattgtcgtgattgggattatgcctaaaaaagtcatctacggtgacgcc
cggctcgcaactgatatggacctgagtaaatcaggttttttcccggataaaaaatcacct
tacaaacatccaccaatactcatcggtaaaatgttcaaggggagatacaaaaaacaattt
atttatttcgccggacaacaatttttaattctttatgccccgacacgttctggtaaaggg
gtggggattgttatccccaactgcgtaaactatccaggaagtatggtcatactggatatc
aaacttgaaaactggtttttatcagccggattcaggcaaaaagaattagggcaaaaatgc
tttctctttgcgcccgccggatacgcggaaactatcgaccaggcaattaaaggacagata
cgctctcaccgctggaatcctctggattgcgtcagtcgcagtgatttacttcgtgaaacg
gacctggcaaaaattgccgcaatccttatcccggcaagtgatgatcctatatggtctgat
tctgcacgaaacctttttgtcgggttaggactttacctgctggacaaggagcgttttcac
ctggaacagaaagccaaaggtcataatgtaccggacgttcttgtttccatcagcgccata
ctgaaaacgtcggttcccgatggcggcaaggatctcgccgcatggatgggacaggaaatt
gaaaaccgtagctggattagcgataaaacaaaatcattcttctttaagttcatgtcagca
ccagatcgcacaaggggaagtatagaaacaaacttttcatcaccgctgagcatcttcagc
aaccctattactgctgaggcgacgaatttcagtgattttgatatccgggatattcgtaaa
aagcccatgtcaatttatcttggtctgacaccggatgctttaatcactcatgagaaaatt
gtaaaccttttcttctcattactggttaatgaaaactgtcgtgaactgccggaacacaac
ccggacctgaaataccagtgtcttattctcctggatgaatttacatcaatgggtaaatcg
gaggtcattgaacgcgctgttggttttacagcaggttataaccttcgctttatgttcatt
cttcagaatgaaggacaagggcaaaaaagcgatatgtacggtcaggaaggatggaccaca
ttcactgaaaacagtgctgttgtgctttactatccgccgaaatcaaaaaatgctctggct
aaaaagatttcagaagagattggggtgcgtgatatgaaaatatccaaacgctcaatatcc
agtggtggtggtaagggaggaagttcacgtacacggaatgatgatgtaatagagcgcccg
gttcttcttcctgaagaaattgtgtctctccgggataagaagaataaagccagaaatatt
gcaatccgtgaaattataaccagtgaatttagccgaccatttattgccaacaaaataatc
tggtttgaagaaccagagtttaaacgccgcgtggatatcgcccgtaacaatcatgttgac
attccaaacctgtttacacaagaagtcatggatgaaatagcaaaaattgcagaaatttat
ctccctaaagctggaggaaaaaaagtcatggttgccggaggcaatgtgattactaatcca
gaccttgataatcacgataaaacagacgtatctgaataa

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