Escherichia coli O18 K1 PMV-1 (ExPEC): ECOPMV1_02614
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Entry
ECOPMV1_02614 CDS
T02847
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ecoi
Escherichia coli O18:K1 PMV-1 (ExPEC)
Pathway
ecoi03030
DNA replication
ecoi03410
Base excision repair
ecoi03420
Nucleotide excision repair
ecoi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ECOPMV1_02614 (ligA)
03410 Base excision repair
ECOPMV1_02614 (ligA)
03420 Nucleotide excision repair
ECOPMV1_02614 (ligA)
03430 Mismatch repair
ECOPMV1_02614 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecoi03032
]
ECOPMV1_02614 (ligA)
03400 DNA repair and recombination proteins [BR:
ecoi03400
]
ECOPMV1_02614 (ligA)
Enzymes [BR:
ecoi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ECOPMV1_02614 (ligA)
DNA replication proteins [BR:
ecoi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ECOPMV1_02614 (ligA)
DNA repair and recombination proteins [BR:
ecoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ECOPMV1_02614 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ECOPMV1_02614 (ligA)
MMR (mismatch excision repair)
DNA ligase
ECOPMV1_02614 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ECOPMV1_02614 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
RNA_ligase
DZR_2
Prok-E2_C
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
CDH66016
LinkDB
All DBs
Position
complement(2690849..2692864)
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQ
RVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG
FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGVREVGEATAAGLAAYFGTLEALEA
ASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DETEMLRLLGS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactgacagaactgcgaacgacgcttcgccatcatgaatat
ctttatcatgtgatggatgcgccggaaattcccgacgctgaatacgacaggctgatgcgc
gaactgcgcgagctggaaaccaaacatccagaactgattacgcctgattcgcctacccaa
cgtgtaggtgctgcgccgctggcggctttcagccagatccgccatgaagtgccaatgctg
tcgctggataacgtttttgatgaagaaagctttcttgccttcaacaaacgagtgcaggac
cgtctgaaaagcaacgagaaagtcacctggtgctgtgagctgaagctggatggtcttgcc
gtcagtattctgtatgaaaatggcgttttagtcagtgccgcaactcgtggcgatggcacc
accggggaagatatcacgtctaatgtgcgtactattcgcgccattccgctgaagctacac
ggtgagaatatcccggcgcgtctggaagtgcgtggtgaagtgttcctgccgcaggcgggg
ttcgaaaagattaacgaagatgcgcgacgcacgggcgggaaagtgtttgctaacccacgt
aatgcggcagctggttcactgcgtcagcttgatccgcgtattacagcgaagcgaccgctc
actttcttctgctacggcgttggtgttctggaaggcggtgaattgccggatacccatttg
ggacgcttaatgcaatttaaagcgtggggattacctgtcagcgatcgggtaacgctttgt
gaatcggcggaagaagtgctggcgttctaccacaaagtagaagaagaccgtccgacgctg
ggctttgatatcgacggcgtggtgattaaggtcaactcactggcacagcaggagcagctt
ggctttgtcgcgcgtgccccgcgctgggcggtagcgtttaaattcccggcgcaggaacag
atgacctttgtgcgtgacgtcgagtttcaggttgggcgtactggcgcgattacgcctgtt
gcgcgtctggaacctgtccatgttgctggcgtgttggtgagtaacgctacactgcataat
gctgacgaaatcgaacgtcttggtttacgcattggcgataaagtggtgattcgccgcgct
ggcgacgtgatcccgcaggtggttaacgtcgtgctttctgaacgcccggaagatacccgt
gaggttgtattcccgacgcattgtccggtatgtggttctgacgtcgagcgtgtggaaggt
gaagcggttgcccgctgtaccggtggcctgatttgcggtgcgcagcgtaaagagtctctg
aaacactttgtttcccgccgtgcgatggatgttgacggaatgggcgacaaaatcatcgat
caactggttgaaaaagaatatgtccacactccggcggatctgttcaaactcaccgcaggc
aaactgaccggactggagcgtatggggccgaaatcggcacaaaacgtggttaacgcgctg
gaaaaagcgaaagaaaccacctttgcccgcttcctctatgcacttggcgtccgtgaagtc
ggcgaggctaccgcagcaggtctggcggcatatttcggcacgctggaagcgctggaagcc
gcgtcgattgaagagctgcaaaaggtgcctgatgttggaattgtcgttgcctcccacgtt
cacaacttctttgccgaagaaagcaaccgcaatgtcatcagcgagctgttggcggaaggt
gttcactggcctgagccgatcgttatcaatgcggaagagattgacagtccgtttgctggt
aaaaccgtggtgcttacgggcagcttaagccagatgtcgcgtgatgacgctaaagctcga
ctggtcgaactgggggcgaaagtcgcgggcagcgtgtcgaagaaaaccgatctggtgata
gcgggtgaagctgcaggatctaaactggcgaaggcgcaggaactgggcattgaagtcatc
gacgaaacggaaatgctgcgtttgctgggtagctga
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integrated database retrieval system
