Escherichia coli JJ1886: P423_20245
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Entry
P423_20245 CDS
T02896
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ecoj
Escherichia coli JJ1886
Pathway
ecoj03030
DNA replication
ecoj03410
Base excision repair
ecoj03420
Nucleotide excision repair
ecoj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecoj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P423_20245 (ligB)
03410 Base excision repair
P423_20245 (ligB)
03420 Nucleotide excision repair
P423_20245 (ligB)
03430 Mismatch repair
P423_20245 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecoj03032
]
P423_20245 (ligB)
03400 DNA repair and recombination proteins [BR:
ecoj03400
]
P423_20245 (ligB)
Enzymes [BR:
ecoj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P423_20245 (ligB)
DNA replication proteins [BR:
ecoj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P423_20245 (ligB)
DNA repair and recombination proteins [BR:
ecoj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P423_20245 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P423_20245 (ligB)
MMR (mismatch excision repair)
DNA ligase
P423_20245 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P423_20245 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AGY86321
LinkDB
All DBs
Position
complement(4152991..4154673)
Genome browser
AA seq
560 aa
AA seq
DB search
MKVWMAILISILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGV
YDQLSARLTQWQRCFGNETRDVMIPPLNGAVMHPVAHTGVRKMADKNALSLWMRERSDLW
VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANSTLQGE
IFLKRKGHIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPHLMTDRLKDLA
TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVRAAKEPESRHWLPGQAEWL
VAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDKKVQRVNIGSVRRWQEWDIA
PGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWL
GSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFNLA
RQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKEN
AQIKKLGSWLAAQQITGFEP
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtatggatggcgatattaataagtatcttgtgctggcaatcatcggtgtgggcg
gtctgtccggcctggtcgccagccagagcacaggaagaaatttcccgcctgcaacagcaa
ataaaacagtgggacgatgactactggaaggaagggaaaagtgaggtggaagacggtgtt
tacgatcagttaagcgcccgtcttacgcagtggcaacgctgttttgggaacgagacccgc
gatgtgatgataccgcctttaaacggtgcggttatgcatccggttgcccatacgggtgta
cgcaaaatggcggataaaaacgcattaagtctttggatgcgcgaacgtagcgatctttgg
gtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgggacgggaaactgaac
aaagcaatcagtcgcggcaatggcctgaaaggcgaggactggacgcagaaagttcgctta
atttccgctgtgccgcaaaccgttagcgggcctttagccaacagcacgcttcagggggaa
atatttctcaagcgtaaggggcatatccaacaacaaatggggggaataaatgcccgcgca
aaagttgctggcctgatgatgcgccaggggaatagcgatacgctaaactcactggctgtt
tttgtctgggcatggccggatggaccgcatttaatgaccgatcgtttaaaggatctggct
accgcaggttttactttaacgcagacgtatacccgcgcggttaaaaatgctgatgaggtt
gcgcacgtacgcaatgagtggtggaaagcaaaattacccttcgtcaccgatggcgtggtt
gtgcgagcggcgaaagaacccgaatcccgtcattggctaccgggccaggcggagtggctg
gtggcctggaaatatcaacctgtagctcaggttgccgaagtgaaggcgattcagtttgcg
gtgggtaagagcggtaaaatatcggtggttgcgtcacttgtacctgtcatgctggatgat
aaaaaagtccagcgggtgaatattggttccgtcaggcgctggcaggagtgggatattgcg
cctggtgatcagatcctcgtcagccttgccggtcaggggattcctcgcattgatgatgtg
gtctggcgcggagcagaacgtacaaaaccgacaccaccagaaaaccgctttaactcgttg
acctgctactttgcttctgatgtttgtcaggaacagttcatttcacgcttagtctggctg
gggtcaaaacaggttctggggcttgatggcattggtgaggccggctggcgcgccctgcat
cagactcatcgctttgagcatatcttttcctggcttttattaacgccagagcaattacag
aacacgccggggatcgcgaaaagtaaaagtgcgcagttatggcatcagtttaatctggct
cgtcagcagccttttactcgctgggtgatggcaatgggaataccgctaactcgggcggcg
cttaatgccagtgatgaacggtcctggtcgcaacttttatttagcacggaacagttctgg
cagcagctgccggggactggatcggggcgcgccagacaggttattgaatggaaggaaaat
gcgcaaatcaagaagctgggcagttggctggctgcccagcagatcacaggttttgaacct
tag
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