Escherichia coli O25b K100 H4-ST131 EC958 (UPEC): EC958_4054
Help
Entry
EC958_4054 CDS
T04373
Symbol
yicF
Name
(GenBank) hypothetical DNA ligase-like protein YicF
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ecos
Escherichia coli O25b:K100:H4-ST131 EC958 (UPEC)
Pathway
ecos03030
DNA replication
ecos03410
Base excision repair
ecos03420
Nucleotide excision repair
ecos03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EC958_4054 (yicF)
03410 Base excision repair
EC958_4054 (yicF)
03420 Nucleotide excision repair
EC958_4054 (yicF)
03430 Mismatch repair
EC958_4054 (yicF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecos03032
]
EC958_4054 (yicF)
03400 DNA repair and recombination proteins [BR:
ecos03400
]
EC958_4054 (yicF)
Enzymes [BR:
ecos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EC958_4054 (yicF)
DNA replication proteins [BR:
ecos03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EC958_4054 (yicF)
DNA repair and recombination proteins [BR:
ecos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EC958_4054 (yicF)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EC958_4054 (yicF)
MMR (mismatch excision repair)
DNA ligase
EC958_4054 (yicF)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EC958_4054 (yicF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Vpu
Motif
Other DBs
NCBI-ProteinID:
CDN84404
UniProt:
A0AA36PAT3
LinkDB
All DBs
Position
complement(4107209..4108897)
Genome browser
AA seq
562 aa
AA seq
DB search
MMMKVWMAILISILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVED
GVYDQLSARLTQWQRCFGNETRDVMIPPLNGAVMHPVAHTGVRKMADKNALSLWMRERSD
LWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANSTLQ
GEIFLKRKGHIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPHLMTDRLKD
LATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVRAAKEPESRHWLPGQAE
WLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLVPVMLDDKKVQRVNIGSVRRWQEWD
IAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLV
WLGSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFN
LARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWK
ENAQIKKLGSWLAAQQITGFEP
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
gtgatgatgaaagtatggatggcgatattaataagtatcttgtgctggcaatcatcggtg
tgggcggtctgtccggcctggtcgccagccagagcacaggaagaaatttcccgcctgcaa
cagcaaataaaacagtgggacgatgactactggaaggaagggaaaagtgaggtggaagac
ggtgtttacgatcagttaagcgcccgtcttacgcagtggcaacgctgttttgggaacgag
acccgcgatgtgatgataccgcctttaaacggtgcggttatgcatccggttgcccatacg
ggtgtacgcaaaatggcggataaaaacgcattaagtctttggatgcgcgaacgtagcgat
ctttgggtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgggacgggaaa
ctgaacaaagcaatcagtcgcggcaatggcctgaaaggcgaggactggacgcagaaagtt
cgcttaatttccgctgtgccgcaaaccgttagcgggcctttagccaacagcacgcttcag
ggggaaatatttctcaagcgtaaggggcatatccaacaacaaatggggggaataaatgcc
cgcgcaaaagttgctggcctgatgatgcgccaggggaatagcgatacgctaaactcactg
gctgtttttgtctgggcatggccggatggaccgcatttaatgaccgatcgtttaaaggat
ctggctaccgcaggttttactttaacgcagacgtatacccgcgcggttaaaaatgctgat
gaggttgcgcacgtacgcaatgagtggtggaaagcaaaattacccttcgtcaccgatggc
gtggttgtgcgagcggcgaaagaacccgaatcccgtcattggctaccgggccaggcggag
tggctggtggcctggaaatatcaacctgtagctcaggttgccgaagtgaaggcgattcag
tttgcggtgggtaagagcggtaaaatatcggtggttgcgtcacttgtacctgtcatgctg
gatgataaaaaagtccagcgggtgaatattggttccgtcaggcgctggcaggagtgggat
attgcgcctggtgatcagatcctcgtcagccttgccggtcaggggattcctcgcattgat
gatgtggtctggcgcggagcagaacgtacaaaaccgacaccaccagaaaaccgctttaac
tcgttgacctgctactttgcttctgatgtttgtcaggaacagttcatttcacgcttagtc
tggctggggtcaaaacaggttctggggcttgatggcattggtgaggccggctggcgcgcc
ctgcatcagactcatcgctttgagcatatcttttcctggcttttattaacgccagagcaa
ttacagaacacgccggggatcgcgaaaagtaaaagtgcgcagttatggcatcagtttaat
ctggctcgtcagcagccttttactcgctgggtgatggcaatgggaataccgctaactcgg
gcggcgcttaatgccagtgatgaacggtcctggtcgcaacttttatttagcacggaacag
ttctggcagcagctgccggggactggatcggggcgcgccagacaggttattgaatggaag
gaaaatgcgcaaatcaagaagctgggcagttggctggctgcccagcagatcacaggtttt
gaaccttag
DBGET
integrated database retrieval system
