Escherichia coli O81 ED1a (commensal): ECED1_3225
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Entry
ECED1_3225 CDS
T00827
Symbol
ygcF
Name
(GenBank) conserved hypothetical protein
KO
K10026
7-carboxy-7-deazaguanine synthase [EC:
4.3.99.3
]
Organism
ecq
Escherichia coli O81 ED1a (commensal)
Pathway
ecq00790
Folate biosynthesis
ecq01100
Metabolic pathways
Module
ecq_M00988
PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
Brite
KEGG Orthology (KO) [BR:
ecq00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00790 Folate biosynthesis
ECED1_3225 (ygcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ecq03016
]
ECED1_3225 (ygcF)
Enzymes [BR:
ecq01000
]
4. Lyases
4.3 Carbon-nitrogen lyases
4.3.99 Other carbon-nitrogen lyases
4.3.99.3 7-carboxy-7-deazaguanine synthase
ECED1_3225 (ygcF)
Transfer RNA biogenesis [BR:
ecq03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
ECED1_3225 (ygcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
Fer4_12
Motif
Other DBs
NCBI-ProteinID:
CAR09385
UniProt:
B7MZ68
LinkDB
All DBs
Position
complement(3159581..3160252)
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AA seq
223 aa
AA seq
DB search
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAK
TKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETS
GTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTD
DKPRVIALQPISQKEDATRLCIDTCIARNWRLSMQTHKYLNIA
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atgcagtacccgattaacgagatgttccagaccctgcaaggtgagggttactttaccggc
gtccccgccatttttattcgtttacagggatgtccggttggctgtgcctggtgcgacacc
aaacacacctgggaaaagcttgaggatcgggaagtctcccttttcagcattctggcgaag
accaaagagagtgataagtggggggcggcgagcagtgaagatttgctggctgtcattggc
cgtcagggatacaccgcgcgtcatgtggtgattacgggtggtgagccttgcattcatgat
ttgctgccactgactgacctgctcgaaaagaacggttttagctgccagatcgaaaccagt
ggtactcatgaagtacgctgcacaccgaatacctgggttaccgtatcaccaaagctaaat
atgcgcggtggctatgaagtgttgtcacaagccctggagcgagccaacgaaatcaaacac
ccagtaggacgcgtacgtgatattgaagcactggatgaattgctggcgacgctgaccgat
gataaaccgcgagtcattgcacttcagccaattagccagaaggaagatgctacgcgttta
tgtatcgatacctgcattgcgcgcaactggcgtttgtcgatgcagacacataaatatttg
aatattgcctga
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