Etheostoma cragini (Arkansas darter): 117935928 Help Entry 117935928         CDS       T07493                                  Name (RefSeq) thrombospondin-1-like   KO K16857   thrombospondin 1 Organism ecra  Etheostoma cragini (Arkansas darter) Pathway ecra04115   p53 signaling pathway ecra04145   Phagosome ecra04148   Efferocytosis ecra04350   TGF-beta signaling pathway ecra04510   Focal adhesion ecra04512   ECM-receptor interaction ecra04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:ecra00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     117935928   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     117935928  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     117935928    04148 Efferocytosis     117935928   09143 Cell growth and death    04115 p53 signaling pathway     117935928   09144 Cellular community - eukaryotes    04510 Focal adhesion     117935928   09142 Cell motility    04820 Cytoskeleton in muscle cells     117935928  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:ecra04131]     117935928   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ecra00536]     117935928 Membrane trafficking [BR:ecra04131]  Endocytosis   Phagocytosis    Opsonins     117935928 Glycosaminoglycan binding proteins [BR:ecra00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    117935928 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC VWC2L_2nd TSP1_CFP_C EGF_3 TSP1_ADAMTS EGF_CA Laminin_G_3 cEGF Zn_ribbon_NUD EGF TSP1_CCN Laminin_G_2 Motif Other DBs NCBI-GeneID:  117935928 NCBI-ProteinID:  XP_034714458 LinkDB All DBs Position 20:complement(15747198..15756216) Genome browser AA seq 1171 aa AA seqDB search MLCGSLLLLMLWSCEGARLAENRDDNSVYDLFDLARVNKRGNGVSLVKGEDPYSPAYKLL NADLIPPVPDSSFRDLLDSIQAERGFLLLVNLKQLKKSRGSLLSVEKNDGSGPVFEIISN GKANTLDVIYSFMNQQQVVSIDDADLATGHWKNMTLFVQDDQVQLYVGCEKIDGSEMDVP IYKVLSQQVADNAKLRIGKGAVRDKFKGVLQNVHFVFGTTLDAILRNKGCQSGAALTDVM TLDNPVNGSSPAIRTDFTGHKAKDPQSVCGYSCEDITGMFKELKGLGVVVKQLSNELRKV YEEISLPEIQMHIHGGICIHNGIVYKDKDEWTVDGCTECTCQKSATVCRKISCPLIPCAN ATVPDGECCPRCGTPSDFAEDGWSPWSDWTHCSVTCGRGIQQRGRSCDRINSNCDGTSVQ TRDCYPKECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGSDCQGEGR QTEICQKSPCPIDGGWGPWSPWDTCTVTCGGGVQIRKRLCSDPIPKYGGKDCVGDATVTQ VCNKQDCPIDGCLSSPCFPGAKCNSFPDGSFRCGKCPLGYNGNGITCKDIDECEEVPDAC HTHNGVHRCENTEPGYNCLPCPTRFSGPQPFGKGVEQATAKKQVCKPRNPCQDGSHDCHK NANCIYLGVFSESMFRCECRPGYAGNGRICGEDSDLDGWPNTDLHCVENATYHCMKDNCP NLPNSGQEDHDKDGLGDECDHDDDNDGIPDDRDNCPKEYNPAQYDADRDDIGDRCDNCVY EANTDQTDTDNNGEGDACAVDIDGDGILNEIDNCPYVYNVDQRDTDRDRVGDHCDNCPLE HNPDQIDSDSDRVGDKCDNNQDIDEDGHQNNLDNCPYISNANQADHDKDGKGDACDHDDD NDGIPDDKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDSVLDIHDVCPENFAISETDFRR FQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFSAVDFSGTFFINTDRD DDYAGFVFGYQSSSRFYTVMWKQITQTYWSHTPTRAQGYSGLSIKVVNSTTGPGEHLRNA LWHTGDTPGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKTGLIRVVMYEGKRIMADSGNLY DKTYAGGRLGLYVFSQEMVYFSDLKYECRDT NT seq 3516 nt NT seq  +upstreamnt  +downstreamnt atgctgtgtggcagccttttgctgttgatgctttggagctgtgaaggcgcaagattggca gagaatcgggatgataacagtgtgtatgacttatttgatctggcccgggtaaacaagaga ggcaatggagtgagtctggtcaaaggtgaagatccctacagccccgcatataagctccta aatgcagacctgatccccccagtccccgacagctccttcagggacctcctcgactccatc caggcggagaggggcttcctcctcctggtcaacctgaagcagttaaaaaaatccaggggc agccttttgagcgtcgagaagaatgacggctccgggccagttttcgagatcatctccaac ggaaaggcaaacactctggatgtgatctactcctttatgaaccagcagcaggtcgtgtcc atcgatgatgctgatttggccactggacactggaagaatatgacgctgtttgttcaggat gaccaggtgcagctttatgttggctgtgagaagatcgatggatcagagatggatgtgcca atctacaaagttctgtcacaacaagtggcagacaatgccaagctaagaattggaaaggga gcggtcagggacaaattcaagggagtgcttcaaaatgtgcactttgtatttgggaccact cttgatgccatactgagaaataagggatgccagagtggagctgctttaaccgatgtcatg accctggacaacccagtcaatggctccagccccgccattaggactgattttaccggccac aaagccaaagatccgcagtctgtttgcggctactcttgtgaggacatcactggcatgttt aaggagctcaagggactcggtgtggttgttaaacagctgtcgaatgagctccgcaaagtg tatgaggagatttcccttccggaaattcaaatgcacatccacggtggaatttgcatccac aacggcattgtttacaaggacaaagatgaatggactgtggatggctgcacagagtgtacc tgccagaaatctgcaactgtgtgtcgcaagatctcttgccctctgatcccatgtgctaat gccactgtgcccgatggagagtgctgccctcgctgtggaacaccgagtgactttgcagag gatggttggtccccctggtctgactggacccattgttcggtaacttgtggtagaggcatc cagcagcgtggacgctcctgtgaccgcatcaacagcaactgtgacggcacctctgtccag acccgtgactgctaccccaaggaatgtgacaaacgcttcaaacaggatggtggttggagc cactggtctccatggtcttcatgctctgtgacctgtggtgagggggtcatcacccggata cgcctctgcaactcccccacaccccagatgggtggcagtgactgccagggagaaggacgt caaacagaaatctgccaaaagtcaccctgtcctatcgatggaggttggggaccttggtca ccatgggacacctgcactgttacctgtggtggaggagtccagatccgcaaacgtctctgc tctgaccccatccctaaatatggaggaaaggattgtgttggagatgctactgtgactcaa gtgtgcaacaaacaggactgtcctattgatggttgtctctccagcccttgcttccctggc gcaaaatgcaacagcttccccgatggttctttccgatgcggcaagtgtccacttggctac aatgggaacggcatcacttgcaaagacattgacgagtgtgaggaggtccctgatgcttgc cacacacataatggagtccaccgctgtgagaacactgaaccgggctacaactgtctgccc tgccccacgcgtttctcaggtcctcagccctttggaaaaggagtggaacaggcaactgct aaaaaacaggtttgcaaaccccgtaacccttgccaagatggtagccacgactgccataaa aacgctaactgcatctacttgggcgtcttctctgaatccatgttccgctgcgagtgcagg ccaggatatgccggaaatggccggatatgcggagaggatagtgacctggacggatggccc aacactgacctgcattgtgtggagaacgccacttaccactgcatgaaggataactgcccc aaccttcccaactctggccaggaagatcacgacaaagatggcctgggtgatgaatgtgac catgatgatgacaatgatgggatccccgatgatagggacaactgcccgaaagaatacaac cctgcccagtatgacgcagacagagatgacattggcgaccgctgtgacaactgtgtgtac gaggctaacactgaccaaaccgacactgacaacaacggagagggtgacgcctgtgctgtt gacattgatggggatggcattctaaatgagattgacaactgcccatatgtttacaacgtg gaccagcgagataccgacagggacagggtgggagaccattgtgacaactgccctctggag cacaaccctgatcagatcgactctgactcagatcgcgtaggagacaagtgcgacaacaac caggacattgacgaggatggtcaccagaacaatttggacaattgcccctatatatccaat gccaaccaggcagaccacgacaaggatggcaagggtgacgcctgtgaccatgatgatgac aacgacggcattcctgatgacaaagacaactgtaggctggcatttaaccctgatcagctg gattctgatggtgatggccgtggtgacgtgtgcaaagacgattttgaccaagacagtgtt ttggacatccatgacgtgtgcccggagaactttgccatcagtgaaacagacttccgcaga tttcaaatggttcctttggaccccaagggcacctcccagatcgaccccaactgggtggtc cggcatcagggcaaggagctggtgcagactgtcaactgcgatcctggcattgctgttggc tttgatgagttcagcgcggtggattttagtggaacgttcttcatcaacacagacagagat gacgactacgctgggttcgtgtttggctaccagtccagctcacgcttctacactgtgatg tggaaacagatcacacagacctactggtcccacacacccacaagagctcaaggctactct ggcctgtcaatcaaagtggtcaactccaccaccgggcctggtgagcatctgaggaatgcc ctgtggcacactggagacacccccggacaggtgcgtactctgtggcacgatcccaagaac attggctggaaggacttcaccgcctacagatggcatctgacccacagacccaagactggt cttattagagtggtcatgtatgaaggcaagagaatcatggccgattctggaaacctttac gacaagacctatgctggtgggcgactaggcttgtacgtcttctctcaggagatggtttac ttctcagacctcaaatacgaatgcagagatacataa

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