Etheostoma cragini (Arkansas darter): 117937301
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Entry
117937301 CDS
T07493
Symbol
irf3
Name
(RefSeq) interferon regulatory factor 3 isoform X1
KO
K05411
interferon regulatory factor 3
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04620
Toll-like receptor signaling pathway
ecra04621
NOD-like receptor signaling pathway
ecra04622
RIG-I-like receptor signaling pathway
ecra04623
Cytosolic DNA-sensing pathway
ecra05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
117937301 (irf3)
04621 NOD-like receptor signaling pathway
117937301 (irf3)
04622 RIG-I-like receptor signaling pathway
117937301 (irf3)
04623 Cytosolic DNA-sensing pathway
117937301 (irf3)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117937301 (irf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecra03000
]
117937301 (irf3)
04131 Membrane trafficking [BR:
ecra04131
]
117937301 (irf3)
Transcription factors [BR:
ecra03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
117937301 (irf3)
Membrane trafficking [BR:
ecra04131
]
Autophagy
Other autophagy associated proteins
TRIM-directed selective autophagy
117937301 (irf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
117937301
NCBI-ProteinID:
XP_034717053
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All DBs
Position
21:complement(10933684..10940714)
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AA seq
466 aa
AA seq
DB search
MSHSKPLLVPWLRTKIDSERYPGVHWTNLDRTEFAIPWKHALRQDSSDTDILIFKAWAEV
SGNGRAHGDPSVWKRNFRSALRAKGFKMVSDNKNDAANPHKVFRWPAESPSGATSSAGSQ
DQDDPDLFEDYPLPTQERQVIPCFDGSLYLPEDTVFSAESSANHDILQECLMGLNICPET
EGNAGFEPPPEQQQLQNPVVIGGHALPGQQQYPVMFEGSVGEAGLPEQPARPMEGAMGGA
CDGHLAEQFLHTMTQTSYGENFKTQFRILVYYRGVMVSEQEVHNEVGIRLVYRPELKGTV
LDHESGLTLVSLPSPGPMLDHTQANLTQRILDKLGDGLDVRVSGHVVYGQRLGEIKAFWS
LSKFDSSRRPQEISKLEPQQIYHFKDFVRGILEFIDGKNSPPCSLFFCLGEKWPDSDNRP
WEKKLITVEVVLTSMELLKNMAVEGGASSLQSMELQMSLEEMMEMY
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgtctcattcgaaaccactgctcgtcccgtggctgcggaccaagattgacagcgaaagg
tatcccggtgtccactggacaaacctggacaggacagagttcgccatcccgtggaaacat
gctttgagacaggactcctccgacacggacatcctcatctttaaggcctgggcagaggta
agtggcaatggccgggctcatggagacccctcggtctggaagaggaacttccgcagcgcc
ctccgagccaaaggctttaaaatggtctctgacaacaagaacgacgctgctaacccccat
aaagtgtttcgctggccggccgagtcaccatcaggagctacctcttctgccggatctcag
gaccaagatgaccccgatttgtttgaggattatccccttcctacacaagaaaggcaggtc
atcccatgctttgatggctctctctatcttccagaagacactgtgttttcagcagaatcc
tctgccaaccatgatattctccaggagtgtctaatgggactgaacatctgccctgaaaca
gaaggcaacgcaggctttgagcctcctccggagcaacaacagctccaaaacccagttgtg
attggtggacacgcgttgcctgggcaacagcagtatccagtaatgtttgagggttcagtc
ggtgaagctgggttgcctgagcaaccggcacgtccaatggagggagccatgggaggggcc
tgtgatgggcatctggcagagcagttcctacatacaatgacccaaaccagttatggagag
aatttcaagactcaattcaggatattagtgtactacagaggggtgatggtgtctgagcag
gaggttcataatgaagttggaatccgcttagtctacaggcctgaactcaaggggacagtt
ttggatcacgagtcaggcctgaccctggtctctctgccaagccctggacccatgctggat
catacccaagccaatctgacccaacgcatcctagacaagctgggcgatggtttggacgtg
agggtgtcaggccatgtggtctacggccagcgactgggcgaaatcaaagcattttggagc
ctctccaagtttgacagcagcaggcggccacaagagatttctaaactggagcctcaacaa
atataccacttcaaggactttgtgcgaggcatattggagttcattgatgggaaaaattcc
cctccgtgctccctgttcttctgcctcggtgagaagtggcctgactcagacaacaggcct
tgggagaagaaactcatcacagtggaggtggtcctgacttcaatggagctactgaagaat
atggcggttgaaggcggcgcctcatccctgcagtcgatggagctgcagatgtcccttgaa
gagatgatggagatgtattga
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